a) Does the 'rds' file you tried to make exist?
file.exists("mat.RDs")
b) It should have a more than c. 10 bytes in it.
file.size("mat.RDs")
c) It should start with the with the 2-byte "magic number" for gzip files,
1f 8b:
readBin("mat.RDs", what=raw(), n=20)
[1] 1f 8b 08 00 00 00 00 00 00 06 8b e0 62 60 60 60 66 60 61 60
d) When unzipped it should start with the rds header, 58 0a, then version 3,
then the version of R that made it (4 0 2), and the earliest version of R
that can
read it (3 5 0):
readBin(gzfile("mat.RDs","rb"), what=raw(), n=20)
[1] 58 0a 00 00 00 03 00 04 00 02 00 03 05 00 00 00 00 06 43 50
Failure of d will give you the "unknown input format" error'. Failure
of c means you used compress=FALSE in the call to saveRDS.
-Bill
On Tue, Sep 8, 2020 at 4:11 PM Dirk Eddelbuettel <e...@debian.org> wrote:
>
> On 8 September 2020 at 16:03, Akhila Chowdary Kolla wrote:
> | Thanks a lot for your quick response, Dirk. Instead of printing the
> vector
> | values using std::cout I am planning to serialize those objects using
> | saveRDS and trying to retrieve the stored values using readRDS. I am
> trying
> | to make use of the RInside instance to make a call to R functions.
> Although
> | the class variable is recognized as an integer in the below example,
> when I
> | use readRDS it says unknown input format. Is there a method to serialize
> | Rcpp objects using RInside from a testharness?
> |
> | *Example:*
> | TEST(deepstate_test,datatype){
> | RInside R;
> | R["ms"] = 5;
> | std::string cmd = "cat(class(ms));saveRDS(ms,\"mtest.Rds\");
> | readRDS(\"mtest.Rds\")";
> | R.parseEval(cmd);
> | }
> | *Output:*
> | akhila@akhila-VirtualBox:~$ ./newtest
> |
> |
> |
> |
> |
> |
> |
> | *TRACE: Running: deepstate_test_datatype from newtest.cpp(6)EXTERNAL:
> | integerEXTERNAL: �EXTERNAL: Error in readRDS("mtest.Rds") : unknown input
> | formatterminate called after throwing an instance of 'std::runtime_error'
> | what(): Error evaluating: cat(class(ms));saveRDS(ms,"mtest.Rds");
> | readRDS("mtest.Rds")ERROR: Failed: deepstate_test_datatype*
> |
> | Also, I tried using the below code in my Cpp function. I still get the
> same
> | unknown input format error.
> |
> | Rcpp::NumericMatrix mat = RcppDeepState_NumericMatrix();
> | Environment base("package:base");
> | Function saveRDS = base["saveRDS"];
> | saveRDS(mat,Named("file","mat.RDs"));
> | Function readRDS = base["readRDS"];
> | readRDS("mat.RDs");
> |
> | Any help is appreciated. Thanks in advance
>
> That leaves me a little puzzled. No immediate suggestion.
>
> Restoring an R-written RDS with another R session should always work.
> Strange.
>
> Dirk
>
> | Regards,
> | Akhila Chowdary Kolla
> |
> | On Fri, Sep 4, 2020 at 3:15 PM Dirk Eddelbuettel <e...@debian.org> wrote:
> |
> | >
> | > On 4 September 2020 at 11:24, Akhila Chowdary Kolla wrote:
> | > | Hello Everyone,
> | > |
> | > | I am trying to use NA_REAL, NA_INTEGER, and R_NaN in my CPP
> code(doesn't
> | > | use R main). When I compile and run my code,* NA_REAL* it gives the
> value
> | > | as *nan* and *NA_INTEGER* gives the value as *-2147483648, and R_NaN
> as
> | > 0*.
> | > |
> | > | I used the following code(from Rcpp FAQ):
> | > | Rcpp::IntegerVector Missing_I() {
> | > | Rcpp::IntegerVector v(1);
> | > | v[0] = NA_INTEGER; // NA
> | > | return v;
> | > | }
> | > | Rcpp::NumericVector Missing_N() {
> | > | Rcpp::NumericVector v(4);
> | > | v[0] = R_NegInf; // -Inf
> | > | v[1] = NA_REAL; // NA
> | > | v[2] = R_PosInf; // Inf
> | > | v[3] = R_NaN; // nan
> | > | return v;
> | > | }
> | > |
> | > | When I compile the functions using sourceCpp() I get the output as
> | > expected:
> | > | > sourceCpp("~/R/RcppDeepState/inst/extdata/filesave.cpp")
> | > | > Missing_I()
> | > | [1] NA
> | > | > Missing_N()
> | > | [1] -Inf NA Inf NaN
> | > |
> | > | But when I compile the code using the TestHarness it gives me the
> | > following
> | > | output:
> | > | missing_n values: -inf nan inf 0
> | > | missing_i values: -2147483648
> | > |
> | > | I saved the above functions(Missing_I, Missing_N) in a header file
> and
> | > made
> | > | a call to those functions from the testharness:
> | > |
> | > | TEST(deepstate_test,datatype){
> | > | RInside();
> | > | Rcpp::IntegerVector missing_i = Missing_I();
> | > | std::cout <<"missing_i values: "<< missing_i << std::endl;
> | > | Rcpp::NumericVector missing_n = Missing_N();
> | > | std::cout <<"missing_n values: "<< missing_n << std::endl;
> | > | }
> | > |
> | > | How can I get the results as expected? Any help is appreciated.
> | >
> | > Am I understanding you correctly that you would like _the R behaviour_
> but
> | > in
> | > a non-R context (such as a catch or Google gtest harness) ? You can't
> as
> | > easily as R actively adds some extensions. I.e. IEEE 754 defines this
> for
> | > doubles, but "nobody" besides R does it for Int. So you would have to
> add
> | > your print function.
> | >
> | > Dirk
> | >
> | > --
> | > https://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
> | >
>
> --
> https://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
> _______________________________________________
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