Hi All,
I tried to install via homebrew but after running it cannot move to stage
of rdkit installation on Mac 10.9.1
brew install --HEAD rdkit
==>* Installing rdkit dependency: *boost
*==>** Downloading
http://downloads.sourceforge.net/project/boost/boost/1.49.0/boos
<http://downloads.sourceforge.net/project/boost/boost/1.49.0/boos>*
Already downloaded: /Library/Caches/Homebrew/boost-1.49.0.tar.bz2
*==>** ./bootstrap.sh --prefix=/usr/local/Cellar/boost/1.49.0
--libdir=/usr/local/C*
*==>** ./bjam --prefix=/usr/local/Cellar/boost/1.49.0
--libdir=/usr/local/Cellar/bo*
When i was trying to build from source then i am having some types.cpp
error .Attached is the log of error msg.
Then i tried to install RDkit from source with Boost and all dependencies.I
was able to install Boost1.49 but the problem with rdkit cmake is that it
is throwing an error at
make[2]: *** [Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o] Error 1
make[1]: *** [Code/RDGeneral/CMakeFiles/RDGeneral.dir/all] Error
My command was cmake -D
PYTHON_LIBRARY=/usr/lib/python2.7/config/libpython2.7.a -D
PYTHON_INCLUDE_DIR=/usr/include/python2.7 -D
PYTHON_EXECUTABLE=/usr/bin/python -DBOOST_ROOT=/usr/local/boost_1_49_0
Then i also changed the boost version to 1.55 again i found the same error
Anyone came across this type of error ?
Attached is my error log.
Can anyone guide me through whats going wrong.
Abhik Seal
Indiana University Bloomington
Department of Chemical Informatics
[email protected]
*OSDD CHEMINFORMATICS*
+18123699097
http://mypage.iu.edu/~abseal/index.htm
---------- Forwarded message ----------
From: Abhik Seal <[email protected]>
Date: Mon, Feb 24, 2014 at 11:25 PM
Subject: Error in installation of RDkit from source on Mac OSx 10.9.1
To: "[email protected]" <
[email protected]>
Hi All,
I tried to install via homebrew but after running it cannot move to stage
of rdkit installation on Mac 10.9.1
brew install --HEAD rdkit
==>* Installing rdkit dependency: *boost
*==>** Downloading
http://downloads.sourceforge.net/project/boost/boost/1.49.0/boos
<http://downloads.sourceforge.net/project/boost/boost/1.49.0/boos>*
Already downloaded: /Library/Caches/Homebrew/boost-1.49.0.tar.bz2
*==>** ./bootstrap.sh --prefix=/usr/local/Cellar/boost/1.49.0
--libdir=/usr/local/C*
*==>** ./bjam --prefix=/usr/local/Cellar/boost/1.49.0
--libdir=/usr/local/Cellar/bo*
When i was trying to build from source then i am having some types.cpp
error .Attached is the log of error msg.
Then i tried to install RDkit from source with Boost and all dependencies.I
was able to install Boost1.49 but the problem with rdkit cmake is that it
is throwing an error at
make[2]: *** [Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o] Error 1
make[1]: *** [Code/RDGeneral/CMakeFiles/RDGeneral.dir/all] Error
My command was cmake -D
PYTHON_LIBRARY=/usr/lib/python2.7/config/libpython2.7.a -D
PYTHON_INCLUDE_DIR=/usr/include/python2.7 -D
PYTHON_EXECUTABLE=/usr/bin/python -DBOOST_ROOT=/usr/local/boost_1_49_0
Then i also changed the boost version to 1.55 again i found the same error
Anyone came across this type of error ?
Attached is my error log.
Can anyone guide me through whats going wrong.
Thanks
Abhik
Abhik Seal
Indiana University Bloomington
Department of Chemical Informatics
[email protected]
*OSDD CHEMINFORMATICS*
+18123699097
http://mypage.iu.edu/~abseal/index.htm
abhikseal/usr/local/src/RDKit_2013_09_1/build$cmake ..
-- Boost version: 1.55.0
-- Found the following Boost libraries:
-- python
-- Boost version: 1.55.0
-- Found the following Boost libraries:
-- regex
-- Configuring done
-- Generating done
-- Build files have been written to: /usr/local/src/RDKit_2013_09_1/build
abhikseal/usr/local/src/RDKit_2013_09_1/build$make
[ 1%] Built target fastentropy
[ 1%] Built target inchi_support
Scanning dependencies of target RDGeneral
[ 2%] Building CXX object
Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o
[ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o
In file included from
/usr/local/src/RDKit_2013_09_1/Code/RDGeneral/types.cpp:15:
In file included from /usr/local/src/RDKit_2013_09_1/Code/RDGeneral/types.h:20:
In file included from
/usr/local/src/RDKit_2013_09_1/Code/RDGeneral/Invariant.h:15:
In file included from
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/string:434:
In file included from
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/algorithm:593:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/utility:255:15:
error:
no viable overloaded '='
first = __p.first;
~~~~~ ^ ~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/__tree:1246:35:
note:
in instantiation of member function 'std::__1::pair<const
std::__1::basic_string<char>,
boost::any>::operator=' requested here
__cache->__value_ = *__first;
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/__tree:1187:9:
note:
in instantiation of function template specialization
'std::__1::__tree<std::__1::pair<const
std::__1::basic_string<char>, boost::any>,
std::__1::__map_value_compare<const
std::__1::basic_string<char>, boost::any, std::__1::less<const
std::__1::basic_string<char> >, true>,
std::__1::allocator<std::__1::pair<const std::__1::basic_string<char>,
boost::any> >
>::__assign_multi<std::__1::__tree_const_iterator<std::__1::pair<const
std::__1::basic_string<char>,
boost::any>, const std::__1::__tree_node<std::__1::pair<const
std::__1::basic_string<char>, boost::any>,
void *> *, long> >' requested here
__assign_multi(__t.begin(), __t.end());
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/map:766:21:
note:
in instantiation of member function
'std::__1::__tree<std::__1::pair<const std::__1::basic_string<char>,
boost::any>, std::__1::__map_value_compare<const
std::__1::basic_string<char>, boost::any,
std::__1::less<const std::__1::basic_string<char> >, true>,
std::__1::allocator<std::__1::pair<const
std::__1::basic_string<char>, boost::any> > >::operator=' requested here
__tree_ = __m.__tree_;
^
/usr/local/src/RDKit_2013_09_1/Code/RDGeneral/Dict.h:41:13: note: in
instantiation of member function
'std::__1::map<const std::__1::basic_string<char>, boost::any,
std::__1::less<const
std::__1::basic_string<char> >, std::__1::allocator<std::__1::pair<const
std::__1::basic_string<char>,
boost::any> > >::operator=' requested here
_data = other._data;
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/string:1222:19:
note:
candidate function not viable: 'this' argument has type 'const
std::__1::basic_string<char>', but method
is not marked const
basic_string& operator=(const basic_string& __str);
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/string:1229:45:
note:
candidate function not viable: 'this' argument has type 'const
std::__1::basic_string<char>', but method
is not marked const
_LIBCPP_INLINE_VISIBILITY basic_string& operator=(const_pointer __s)
{return assign(__s);}
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/string:1230:19:
note:
candidate function not viable: 'this' argument has type 'const
std::__1::basic_string<char>', but method
is not marked const
basic_string& operator=(value_type __c);
^
1 error generated.
make[2]: *** [Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o] Error 1
make[1]: *** [Code/RDGeneral/CMakeFiles/RDGeneral.dir/all] Error 2
make: *** [all] Error 2
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