2008/7/15 markus <[email protected]>: > Hi there, > here's a compiling problem when trying to setup the latest trunk: > I wrote a small sh-script for (re-)installing RDKit on Ubuntu. This script > worked very well, until I tried to get the latest trunk on Friday. > For anti-spam-reasons I attached the script which should describe my > procedure > reasonably well: > I downloaded the trunk on Friday, > then removed the old /opt/RDKit and copied the new one in it's place > commented out the copy-related lines in the script (as they are not useful > here) > and ran the script. > > on my Laptop this worked very well, not so on my Desktop. > > i get a bunch of errors stating > failed gcc.compile.c++ ...<nearly every RDKit Directory> > > even bjam invoked in the /usr/local/src/boost_1_34_1/boost directory > throws errors. > > I have to inform you that I had reinstalled my whole compiler suite > some weeks ago, but I think that all neccesary packages, the compilers as > well, > are installed in the first step of the script, aren't they? > > Thanks in advance for the help, > Markus > > > > # run this script as root! > # usage: install_RDkit > > apt-get install python-dev g++ gfortran lapack3-* flex bjam bison > boost-build libboost-* pyste python-yapgvb vflib2 vflib2-* vflib3 vflib3-* > python-imaging python-egenix-mx-base-dbg python-numpy-ext
Correct me if I'm wrong, but won't the asterisk (*) get expanded to match files in the current directory...? You may have to do something like put quotation marks around it. I would just write out each name explicitly to be sure. > export RDBASE=/opt/RDKit > export BOOST=/usr/local/src/boost_1_34_1 > export BOOSTHOME=/usr/local/src/boost_1_34_1 > export BOOST_BUILD_PATH=$BOOSTHOME > export PYTHON_ROOT=/usr/lib/ > export PYTHON_VERSION=2.5 > export PYTHONPATH=/opt/RDKit/Python > export LD_LIBRARY_PATH=/opt/RDKit/bin > > #echo " > ##RDKit-Stuff > #export $RDBASE=/opt/RDKit/" > #export PYTHONPATH=/opt/RDKit/Python:$PYTHONPATH > #export LD_LIBRARY_PATH=/opt/RDKit/bin:$LD_LIBRARY_PATH" | tee -a > /etc/bash.bashrc > > echo " > RDBASE= $RDBASE > BOOST= $BOOST > BOOSTHOME= $BOOSTHOME > BOOST_BUILD_PATH= $BOOST_BUILD_PATH > PYTHON_ROOT= $PYTHON_ROOT > PYTHON_VERSION= $PYTHON_VERSION > PYTHONPATH= $PYTHONPATH > LD_LIBRARY_PATH= $LD_LIBRARY_PATH > " > > #cp -r /myshare/RDKit/RDKit /opt > #cp -r /myshare/RDKit/boost_1_34_1 /usr/local/src > > cd /usr/local/src/boost_1_34_1/boost > > echo " > ...running bjam --with-thread --with-python release install from $PWD > " > bjam --with-thread --with-python release install > > cd /opt/RDKit/Code > > echo " > ... running bjam from $PWD > " > > bjam > > > echo " > ...now running the tests: > " > cd $RDBASE/Code > > python $RDBASE/Python/TestRunner.py test_list.py > > #Here's what you need to uninstall > #bjam --clean > #cd /usr/local/src/boost_1_34_1/ > #bjam --clean > #rm -rf /usr/local/include/boost-1_34_1 /usr/local/src/boost /opt/RDKit > /usr/local/src/boost_1_34_1/ > > > ------------------------------------------------------------------------- > This SF.Net email is sponsored by the Moblin Your Move Developer's challenge > Build the coolest Linux based applications with Moblin SDK & win great > prizes > Grand prize is a trip for two to an Open Source event anywhere in the world > http://moblin-contest.org/redirect.php?banner_id=100&url=/ > _______________________________________________ > Rdkit-discuss mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss > >
