[Rdkit-discuss] installation problems Suse linux

Uwe Richter Mon, 27 Oct 2008 09:27:44 +0000

Hi everybody,

I am new to RDKit and, of course, to this mailing list.
I have been trying to get RDKit to compile on several
linux machines (Suse 10.0 with python2.4, Suse 10.3 with
python 2.5, both 64-bit) but have not been successful so far.
As far as I can see I strictly followed the installation
instructions. After rebuilding the lapack libraries I have
it down now to 14 failures. Please inspect what I get.
Thanks in advance,


Uwe




--
| Dr. Uwe Richter
| Senior Scientist, Computational Chemistry
| Jerini AG
| Invalidenstraße 130
| 10115 Berlin, Germany
|
| Phone:    +49-30-9 78 93-282
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Aufsichtsrates: Dr. Sylvie Grégoire

Sitz: Berlin - Registergericht: Amtsgericht CharlottenburgHandelsregisternummer: HRB 79648 B

warning: Graph library does not contain optional GraphML reader.
note: to enable GraphML support, set EXPAT_INCLUDE and EXPAT_LIBPATH to the
note: directories containing the Expat headers and libraries, respectively.
warning: skipping optional Message Passing Interface (MPI) library.
note: to enable MPI support, add "using mpi ;" to user-config.jam.
note: to suppress this message, pass "--without-mpi" to bjam.
note: otherwise, you can safely ignore this message.
Building Boost.Regex with the optional Unicode/ICU support disabled.
Please refer to the Boost.Regex documentation for more information
(don't panic: this is a strictly optional feature).
warning: No toolsets are configured.
warning: Configuring default toolset "gcc".
warning: If the default is wrong, your build may not work correctly.
warning: Use the "--toolset=xxxxx" option to override our guess.
warning: For more configuration options, please consult
warning: http://boost.org/boost-build2/doc/html/bbv2/advanced/configuration.html
...patience...
...patience...
...found 8372 targets...
...updating 28 targets...
gcc.compile.c++ GraphMol/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/MolOps.o
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp: In instantiation of âboost::dynamic_bitset<long unsigned int, std::allocator<long unsigned int> >â:
./DataStructs/ExplicitBitVect.h:51:   instantiated from here
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error: âboost::detail::dynamic_bitset_allowed_block_type<long unsigned int>::<anonymous enum>â is/uses anonymous type
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error:   trying to instantiate âtemplate<class T> struct boost::is_integralâ

    "g++"  -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall -fPIC -pthread -Wno-unused-function -fPIC -fno-strict-aliasing -DBOOST_THREAD_POSIX -DBOOST_THREAD_USE_DLL=1 -DNDEBUG  -I"." -I"/home/install/RDKit/RDKit_Q32008_1/External/Lapack++/include" -I"/home/install/RDKit/RDKit_Q32008_1/External/vflib-2.0/include" -I"/home/install/RDKit/boost_1_36_0" -I"/usr/include/python2.4" -I"/usr/lib64/python2.4/site-packages/numpy/core/include" -c -o "GraphMol/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/MolOps.o" "GraphMol/Wrap/MolOps.cpp"

...failed gcc.compile.c++ GraphMol/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/MolOps.o...
...skipped <pGraphMol/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>rdmolops.so for lack of <pGraphMol/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>MolOps.o...
...skipped <p/home/install/RDKit/RDKit_Q32008_1/Python/Chem>rdmolops.so for lack of <pGraphMol/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>rdmolops.so...
gcc.compile.c++ GraphMol/FragCatalog/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/FragCatParams.o
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp: In instantiation of âboost::dynamic_bitset<long unsigned int, std::allocator<long unsigned int> >â:
./DataStructs/ExplicitBitVect.h:51:   instantiated from here
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error: âboost::detail::dynamic_bitset_allowed_block_type<long unsigned int>::<anonymous enum>â is/uses anonymous type
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error:   trying to instantiate âtemplate<class T> struct boost::is_integralâ

    "g++"  -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall -fPIC -pthread -Wno-unused-function -fPIC -fno-strict-aliasing -DBOOST_THREAD_POSIX -DBOOST_THREAD_USE_DLL=1 -DNDEBUG  -I"." -I"/home/install/RDKit/RDKit_Q32008_1/External/Lapack++/include" -I"/home/install/RDKit/RDKit_Q32008_1/External/vflib-2.0/include" -I"/home/install/RDKit/boost_1_36_0" -I"/usr/include/python2.4" -I"/usr/lib64/python2.4/site-packages/numpy/core/include" -c -o "GraphMol/FragCatalog/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/FragCatParams.o" "GraphMol/FragCatalog/Wrap/FragCatParams.cpp"

...failed gcc.compile.c++ GraphMol/FragCatalog/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/FragCatParams.o...
gcc.compile.c++ GraphMol/FragCatalog/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/FragCatGenerator.o
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp: In instantiation of âboost::dynamic_bitset<long unsigned int, std::allocator<long unsigned int> >â:
./DataStructs/ExplicitBitVect.h:51:   instantiated from here
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error: âboost::detail::dynamic_bitset_allowed_block_type<long unsigned int>::<anonymous enum>â is/uses anonymous type
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error:   trying to instantiate âtemplate<class T> struct boost::is_integralâ

    "g++"  -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall -fPIC -pthread -Wno-unused-function -fPIC -fno-strict-aliasing -DBOOST_THREAD_POSIX -DBOOST_THREAD_USE_DLL=1 -DNDEBUG  -I"." -I"/home/install/RDKit/RDKit_Q32008_1/External/Lapack++/include" -I"/home/install/RDKit/RDKit_Q32008_1/External/vflib-2.0/include" -I"/home/install/RDKit/boost_1_36_0" -I"/usr/include/python2.4" -I"/usr/lib64/python2.4/site-packages/numpy/core/include" -c -o "GraphMol/FragCatalog/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/FragCatGenerator.o" "GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp"

...failed gcc.compile.c++ GraphMol/FragCatalog/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/FragCatGenerator.o...
gcc.compile.c++ GraphMol/FragCatalog/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/FragFPGenerator.o
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp: In instantiation of âboost::dynamic_bitset<long unsigned int, std::allocator<long unsigned int> >â:
./DataStructs/ExplicitBitVect.h:51:   instantiated from here
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error: âboost::detail::dynamic_bitset_allowed_block_type<long unsigned int>::<anonymous enum>â is/uses anonymous type
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error:   trying to instantiate âtemplate<class T> struct boost::is_integralâ

    "g++"  -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall -fPIC -pthread -Wno-unused-function -fPIC -fno-strict-aliasing -DBOOST_THREAD_POSIX -DBOOST_THREAD_USE_DLL=1 -DNDEBUG  -I"." -I"/home/install/RDKit/RDKit_Q32008_1/External/Lapack++/include" -I"/home/install/RDKit/RDKit_Q32008_1/External/vflib-2.0/include" -I"/home/install/RDKit/boost_1_36_0" -I"/usr/include/python2.4" -I"/usr/lib64/python2.4/site-packages/numpy/core/include" -c -o "GraphMol/FragCatalog/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/FragFPGenerator.o" "GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp"

...failed gcc.compile.c++ GraphMol/FragCatalog/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/FragFPGenerator.o...
...skipped <pGraphMol/FragCatalog/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>rdfragcatalog.so for lack of <pGraphMol/FragCatalog/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>FragCatParams.o...
...skipped <p/home/install/RDKit/RDKit_Q32008_1/Python/Chem>rdfragcatalog.so for lack of <pGraphMol/FragCatalog/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>rdfragcatalog.so...
gcc.compile.c++ GraphMol/MolChemicalFeatures/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/ChemicalFeatureUtils.o
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp: In instantiation of âboost::dynamic_bitset<long unsigned int, std::allocator<long unsigned int> >â:
GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp:22:   instantiated from here
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error: âboost::detail::dynamic_bitset_allowed_block_type<long unsigned int>::<anonymous enum>â is/uses anonymous type
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error:   trying to instantiate âtemplate<class T> struct boost::is_integralâ

    "g++"  -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall -fPIC -pthread -Wno-unused-function -fPIC -fno-strict-aliasing -DBOOST_THREAD_POSIX -DBOOST_THREAD_USE_DLL=1 -DNDEBUG  -I"." -I"/home/install/RDKit/RDKit_Q32008_1/External/Lapack++/include" -I"/home/install/RDKit/RDKit_Q32008_1/External/vflib-2.0/include" -I"/home/install/RDKit/boost_1_36_0" -I"/usr/include/python2.4" -I"/usr/lib64/python2.4/site-packages/numpy/core/include" -c -o "GraphMol/MolChemicalFeatures/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/ChemicalFeatureUtils.o" "GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp"

...failed gcc.compile.c++ GraphMol/MolChemicalFeatures/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/ChemicalFeatureUtils.o...
...skipped <pGraphMol/MolChemicalFeatures/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>rdMolChemicalFeatures.so for lack of <pGraphMol/MolChemicalFeatures/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>ChemicalFeatureUtils.o...
...skipped <p/home/install/RDKit/RDKit_Q32008_1/Python/Chem>rdMolChemicalFeatures.so for lack of <pGraphMol/MolChemicalFeatures/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>rdMolChemicalFeatures.so...
gcc.compile.c++ DataStructs/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/wrap_SparseBV.o
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp: In instantiation of âboost::dynamic_bitset<long unsigned int, std::allocator<long unsigned int> >â:
./DataStructs/ExplicitBitVect.h:51:   instantiated from here
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error: âboost::detail::dynamic_bitset_allowed_block_type<long unsigned int>::<anonymous enum>â is/uses anonymous type
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error:   trying to instantiate âtemplate<class T> struct boost::is_integralâ

    "g++"  -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall -fPIC -pthread -Wno-unused-function -fPIC -fno-strict-aliasing -DBOOST_THREAD_POSIX -DBOOST_THREAD_USE_DLL=1 -DNDEBUG  -I"." -I"/home/install/RDKit/RDKit_Q32008_1/External/Lapack++/include" -I"/home/install/RDKit/RDKit_Q32008_1/External/vflib-2.0/include" -I"/home/install/RDKit/boost_1_36_0" -I"/usr/include/python2.4" -I"/usr/lib64/python2.4/site-packages/numpy/core/include" -c -o "DataStructs/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/wrap_SparseBV.o" "DataStructs/Wrap/wrap_SparseBV.cpp"

...failed gcc.compile.c++ DataStructs/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/wrap_SparseBV.o...
gcc.compile.c++ DataStructs/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/wrap_ExplicitBV.o
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp: In instantiation of âboost::dynamic_bitset<long unsigned int, std::allocator<long unsigned int> >â:
./DataStructs/ExplicitBitVect.h:51:   instantiated from here
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error: âboost::detail::dynamic_bitset_allowed_block_type<long unsigned int>::<anonymous enum>â is/uses anonymous type
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error:   trying to instantiate âtemplate<class T> struct boost::is_integralâ

    "g++"  -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall -fPIC -pthread -Wno-unused-function -fPIC -fno-strict-aliasing -DBOOST_THREAD_POSIX -DBOOST_THREAD_USE_DLL=1 -DNDEBUG  -I"." -I"/home/install/RDKit/RDKit_Q32008_1/External/Lapack++/include" -I"/home/install/RDKit/RDKit_Q32008_1/External/vflib-2.0/include" -I"/home/install/RDKit/boost_1_36_0" -I"/usr/include/python2.4" -I"/usr/lib64/python2.4/site-packages/numpy/core/include" -c -o "DataStructs/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/wrap_ExplicitBV.o" "DataStructs/Wrap/wrap_ExplicitBV.cpp"

...failed gcc.compile.c++ DataStructs/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/wrap_ExplicitBV.o...
gcc.compile.c++ DataStructs/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/wrap_BitOps.o
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp: In instantiation of âboost::dynamic_bitset<long unsigned int, std::allocator<long unsigned int> >â:
./DataStructs/ExplicitBitVect.h:51:   instantiated from here
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error: âboost::detail::dynamic_bitset_allowed_block_type<long unsigned int>::<anonymous enum>â is/uses anonymous type
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error:   trying to instantiate âtemplate<class T> struct boost::is_integralâ

    "g++"  -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall -fPIC -pthread -Wno-unused-function -fPIC -fno-strict-aliasing -DBOOST_THREAD_POSIX -DBOOST_THREAD_USE_DLL=1 -DNDEBUG  -I"." -I"/home/install/RDKit/RDKit_Q32008_1/External/Lapack++/include" -I"/home/install/RDKit/RDKit_Q32008_1/External/vflib-2.0/include" -I"/home/install/RDKit/boost_1_36_0" -I"/usr/include/python2.4" -I"/usr/lib64/python2.4/site-packages/numpy/core/include" -c -o "DataStructs/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/wrap_BitOps.o" "DataStructs/Wrap/wrap_BitOps.cpp"

...failed gcc.compile.c++ DataStructs/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/wrap_BitOps.o...
gcc.compile.c++ DataStructs/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/wrap_Utils.o
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp: In instantiation of âboost::dynamic_bitset<long unsigned int, std::allocator<long unsigned int> >â:
./DataStructs/ExplicitBitVect.h:51:   instantiated from here
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error: âboost::detail::dynamic_bitset_allowed_block_type<long unsigned int>::<anonymous enum>â is/uses anonymous type
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error:   trying to instantiate âtemplate<class T> struct boost::is_integralâ

    "g++"  -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall -fPIC -pthread -Wno-unused-function -fPIC -fno-strict-aliasing -DBOOST_THREAD_POSIX -DBOOST_THREAD_USE_DLL=1 -DNDEBUG  -I"." -I"/home/install/RDKit/RDKit_Q32008_1/External/Lapack++/include" -I"/home/install/RDKit/RDKit_Q32008_1/External/vflib-2.0/include" -I"/home/install/RDKit/boost_1_36_0" -I"/usr/include/python2.4" -I"/usr/lib64/python2.4/site-packages/numpy/core/include" -c -o "DataStructs/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/wrap_Utils.o" "DataStructs/Wrap/wrap_Utils.cpp"

...failed gcc.compile.c++ DataStructs/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/wrap_Utils.o...
...skipped <pDataStructs/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>cDataStructs.so for lack of <pDataStructs/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>wrap_SparseBV.o...
...skipped <p/home/install/RDKit/RDKit_Q32008_1/Python/DataStructs>cDataStructs.so for lack of <pDataStructs/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>cDataStructs.so...
gcc.compile.c++ ML/InfoTheory/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/InfoBitRanker.o
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp: In instantiation of âboost::dynamic_bitset<long unsigned int, std::allocator<long unsigned int> >â:
./DataStructs/ExplicitBitVect.h:51:   instantiated from here
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error: âboost::detail::dynamic_bitset_allowed_block_type<long unsigned int>::<anonymous enum>â is/uses anonymous type
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error:   trying to instantiate âtemplate<class T> struct boost::is_integralâ

    "g++"  -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall -fPIC -pthread -Wno-unused-function -fPIC -fno-strict-aliasing -DBOOST_THREAD_POSIX -DBOOST_THREAD_USE_DLL=1 -DNDEBUG  -I"." -I"/home/install/RDKit/RDKit_Q32008_1/External/Lapack++/include" -I"/home/install/RDKit/RDKit_Q32008_1/External/vflib-2.0/include" -I"/home/install/RDKit/boost_1_36_0" -I"/usr/include/python2.4" -I"/usr/lib64/python2.4/site-packages/numpy/core/include" -c -o "ML/InfoTheory/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/InfoBitRanker.o" "ML/InfoTheory/Wrap/InfoBitRanker.cpp"

...failed gcc.compile.c++ ML/InfoTheory/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/InfoBitRanker.o...
gcc.compile.c++ ML/InfoTheory/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/BitCorrMatGenerator.o
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp: In instantiation of âboost::dynamic_bitset<long unsigned int, std::allocator<long unsigned int> >â:
./DataStructs/ExplicitBitVect.h:51:   instantiated from here
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error: âboost::detail::dynamic_bitset_allowed_block_type<long unsigned int>::<anonymous enum>â is/uses anonymous type
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error:   trying to instantiate âtemplate<class T> struct boost::is_integralâ

    "g++"  -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall -fPIC -pthread -Wno-unused-function -fPIC -fno-strict-aliasing -DBOOST_THREAD_POSIX -DBOOST_THREAD_USE_DLL=1 -DNDEBUG  -I"." -I"/home/install/RDKit/RDKit_Q32008_1/External/Lapack++/include" -I"/home/install/RDKit/RDKit_Q32008_1/External/vflib-2.0/include" -I"/home/install/RDKit/boost_1_36_0" -I"/usr/include/python2.4" -I"/usr/lib64/python2.4/site-packages/numpy/core/include" -c -o "ML/InfoTheory/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/BitCorrMatGenerator.o" "ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp"

...failed gcc.compile.c++ ML/InfoTheory/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/BitCorrMatGenerator.o...
gcc.compile.c++ ML/InfoTheory/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/rdInfoTheory.o
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp: In instantiation of âboost::dynamic_bitset<long unsigned int, std::allocator<long unsigned int> >â:
./DataStructs/ExplicitBitVect.h:51:   instantiated from here
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error: âboost::detail::dynamic_bitset_allowed_block_type<long unsigned int>::<anonymous enum>â is/uses anonymous type
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error:   trying to instantiate âtemplate<class T> struct boost::is_integralâ

    "g++"  -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall -fPIC -pthread -Wno-unused-function -fPIC -fno-strict-aliasing -DBOOST_THREAD_POSIX -DBOOST_THREAD_USE_DLL=1 -DNDEBUG  -I"." -I"/home/install/RDKit/RDKit_Q32008_1/External/Lapack++/include" -I"/home/install/RDKit/RDKit_Q32008_1/External/vflib-2.0/include" -I"/home/install/RDKit/boost_1_36_0" -I"/usr/include/python2.4" -I"/usr/lib64/python2.4/site-packages/numpy/core/include" -c -o "ML/InfoTheory/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/rdInfoTheory.o" "ML/InfoTheory/Wrap/rdInfoTheory.cpp"

...failed gcc.compile.c++ ML/InfoTheory/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/rdInfoTheory.o...
...skipped <pML/InfoTheory/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>rdInfoTheory.so for lack of <pML/InfoTheory/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>InfoBitRanker.o...
...skipped <p/home/install/RDKit/RDKit_Q32008_1/Python/ML/InfoTheory>rdInfoTheory.so for lack of <pML/InfoTheory/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>rdInfoTheory.so...
gcc.compile.c++ ML/FeatureSelect/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/rdFeatSelect.o
In file included from /home/install/RDKit/boost_1_36_0/boost/python/detail/wrap_python.hpp:50,
                 from /home/install/RDKit/boost_1_36_0/boost/python/detail/prefix.hpp:13,
                 from /home/install/RDKit/boost_1_36_0/boost/python/args.hpp:8,
                 from /home/install/RDKit/boost_1_36_0/boost/python.hpp:11,
                 from ./RDBoost/Wrap.h:13,
                 from ML/FeatureSelect/Wrap/rdFeatSelect.cpp:7:
/usr/include/python2.4/pyconfig.h:835:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/string.h:26,
                 from /usr/include/c++/4.0.2/cstring:52,
                 from ML/FeatureSelect/Wrap/rdFeatSelect.cpp:6:
/usr/include/features.h:150:1: warning: this is the location of the previous definition
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp: In instantiation of âboost::dynamic_bitset<long unsigned int, std::allocator<long unsigned int> >â:
./DataStructs/ExplicitBitVect.h:51:   instantiated from here
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error: âboost::detail::dynamic_bitset_allowed_block_type<long unsigned int>::<anonymous enum>â is/uses anonymous type
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error:   trying to instantiate âtemplate<class T> struct boost::is_integralâ

    "g++"  -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall -fPIC -pthread -Wno-unused-function -fPIC -fno-strict-aliasing -DBOOST_THREAD_POSIX -DBOOST_THREAD_USE_DLL=1 -DNDEBUG  -I"." -I"/home/install/RDKit/RDKit_Q32008_1/External/Lapack++/include" -I"/home/install/RDKit/RDKit_Q32008_1/External/cmim-1.0" -I"/home/install/RDKit/RDKit_Q32008_1/External/vflib-2.0/include" -I"/home/install/RDKit/boost_1_36_0" -I"/usr/include/python2.4" -I"/usr/lib64/python2.4/site-packages/numpy/core/include" -c -o "ML/FeatureSelect/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/rdFeatSelect.o" "ML/FeatureSelect/Wrap/rdFeatSelect.cpp"

...failed gcc.compile.c++ ML/FeatureSelect/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/rdFeatSelect.o...
...skipped <pML/FeatureSelect/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>rdFeatSelect.so for lack of <pML/FeatureSelect/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>rdFeatSelect.o...
...skipped <p/home/install/RDKit/RDKit_Q32008_1/Python/ML/FeatureSelect>rdFeatSelect.so for lack of <pML/FeatureSelect/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>rdFeatSelect.so...
gcc.compile.c++ DataManip/MetricMatrixCalc/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/rdMetricMatrixCalc.o
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp: In instantiation of âboost::dynamic_bitset<long unsigned int, std::allocator<long unsigned int> >â:
./DataStructs/ExplicitBitVect.h:51:   instantiated from here
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error: âboost::detail::dynamic_bitset_allowed_block_type<long unsigned int>::<anonymous enum>â is/uses anonymous type
/home/install/RDKit/boost_1_36_0/boost/dynamic_bitset/dynamic_bitset.hpp:66: error:   trying to instantiate âtemplate<class T> struct boost::is_integralâ

    "g++"  -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall -fPIC -pthread -Wno-unused-function -fPIC -fno-strict-aliasing -DBOOST_THREAD_POSIX -DBOOST_THREAD_USE_DLL=1 -DNDEBUG  -I"." -I"/home/install/RDKit/RDKit_Q32008_1/External/Lapack++/include" -I"/home/install/RDKit/RDKit_Q32008_1/External/vflib-2.0/include" -I"/home/install/RDKit/boost_1_36_0" -I"/usr/include/python2.4" -I"/usr/lib64/python2.4/site-packages/numpy/core/include" -c -o "DataManip/MetricMatrixCalc/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/rdMetricMatrixCalc.o" "DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp"

...failed gcc.compile.c++ DataManip/MetricMatrixCalc/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi/rdMetricMatrixCalc.o...
...skipped <pDataManip/MetricMatrixCalc/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>rdMetricMatrixCalc.so for lack of <pDataManip/MetricMatrixCalc/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>rdMetricMatrixCalc.o...
...skipped <p/home/install/RDKit/RDKit_Q32008_1/Python/DataManip/Metric>rdMetricMatrixCalc.so for lack of <pDataManip/MetricMatrixCalc/Wrap/bin/gcc-4.0.2/release/address-model-64/threading-multi>rdMetricMatrixCalc.so...
...failed updating 14 targets...
...skipped 14 targets...

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