Dear all, I've added a page to the wiki with build instructions for MacOS/X: http://code.google.com/p/rdkit/wiki/BuildingOnMacOs
Andrew, these include your troubleshooting information from below. Please let me know if you want me to edit, rewrite, or remove your name. :-) -greg On Sat, Nov 22, 2008 at 5:11 AM, Andrew Dalke <da...@dalkescientific.com> wrote: > On Nov 21, 2008, at 9:20 AM, Greg Landrum wrote: >> The Q3 release (and current svn version, of course) do build (and >> work!) on MacOS. > > I've compiled it on my 10.4 machine but it required some changes that > Greg put into svn and which aren't in the Q3 release. We had that > discussion by private email, but it should probably have been done on- > list. There are still two things which need to be done to compile > from svn on my box: > > 1) I edited Jamroot to point to my numpy include directory. > > was: > > <toolset>darwin:<include>/System/Library/Frameworks/ > Python.framework/Versions/2.5/Extras/lib/python/numpy/core/include > > changed to: > > <toolset>darwin:<include>/Library/Frameworks/Python.framework/ > Versions/2.5/lib/python2.5/site-packages/numpy/core/include > > 2) 10.4 uses an old version of yacc (v1.28 from 1999!), which for > some reason Boost doesn't know how to handle. Greg's looking in to > how to fix this automatically, but another solution might be to > assume that the number of people compiling with 10.4 is dwindling and > not worth worrying about. > > > The problem occurs when converting the yacc grammars for SMILES and > SMARTS. Here's a diagnostic error message: > > GraphMol/SmilesParse/smiles.ll:30:26: error: smiles.tab.hpp: No such > file or directory > GraphMol/SmilesParse/smiles.ll: In function 'int yysmiles_lex()': > GraphMol/SmilesParse/smiles.ll:44: error: 'CHI_CLASS_TOKEN' was not > declared in this scope > GraphMol/SmilesParse/smiles.ll:46: error: 'AT_TOKEN' was not declared > in this scope > > The problem is the created output file is "smiles.tab.cpp.h" instead > of "smiles.tab.hpp" > >> [josiah:~/ftps/RDKit_Q32008_1/Code] dalke% find . -name 'smiles.tab*' >> ./GraphMol/SmilesParse/bin/darwin/release/macosx-version-10.4/ >> threading-multi/smiles.tab.cpp >> ./GraphMol/SmilesParse/bin/darwin/release/macosx-version-10.4/ >> threading-multi/smiles.tab.cpp.h >> ./GraphMol/SmilesParse/bin/darwin/release/macosx-version-10.4/ >> threading-multi/smiles.tab.o >> >> so it looks like the output was ".cpp.h" instead of ".hpp". I >> manually copied it to the ".hpp" form and it seems to have worked - >> I ended up with problems with smarts.tab.hpp instead: > > > That is, I renamed the file, recompiled, and ended up with similar > problems with the SMARTS grammar. I then renamed "smarts.tab.cpp.h" > to "smarts.tab.hpp" and recompiled. That gets me to completion. > > > Andrew > da...@dalkescientific.com > > > > ------------------------------------------------------------------------- > This SF.Net email is sponsored by the Moblin Your Move Developer's challenge > Build the coolest Linux based applications with Moblin SDK & win great prizes > Grand prize is a trip for two to an Open Source event anywhere in the world > http://moblin-contest.org/redirect.php?banner_id=100&url=/ > _______________________________________________ > Rdkit-discuss mailing list > Rdkit-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss >
