Dear Marshall, I believe that the build problems you are having are due to a bad interaction between the boost build system and the way mount points are set up on your machine.
Here's the evidence: On Thu, Jan 8, 2009 at 7:42 PM, Marshall Levesque <marsh...@emolecules.com> wrote: > I get these errors: > > ################## > /home/marshall/boost_1_37_0/tools/build/v2/build/virtual-target.jam: > 1047: in virtual-target.register-actual-name from module virtual-target > error: Duplicate name of actual target: <p/home/marshall/ > RDKit_Q32008_1/bin>libForceField.so > error: previous virtual target { common%common.copy- > libForceField.so.SHARED_LIB .... This makes me think that your RDBASE is /home/marshall/RDKit_Q32008_1 > error: created from ForceField/lib-install > error: added properties: <include>. <xdll-path>/mnt/boron/home/ > marshall/RDKit_Q32008_1/Code/DataStructs/bin/gcc-4.1.2/release/address- > model-64/threading-multi <xdll-path>/mnt/boron/home/marshall/ > RDKit_Q32008_1/Code/Geometry/bin/gcc-4.1.2/release/address-model-64/ And this indicates that bjam is finding the same directories with a different path: /mnt/boron/home/marshall/RDKit_Q32008_1 This causes the confusion and the error. You should be able to solve the problem by changing RDBASE to: /mnt/boron/home/marshall/RDKit_Q32008_1 Best Regards, -greg