Evgueni,

On Mon, Jul 20, 2009 at 9:02 PM, Evgueni Kolossov<ekolos...@gmail.com> wrote:
>
> This is the best (on my opinion) way to do salt stripping - to have a
> library of salts...

agreed. It would be a very useful addition to the open-source version
of the rdkit too.

> Another question - is there function to map fragment to structure (to get
> how many times this fragment appeared in structure)?

Yeah, the substructure matching code does this (Substruct/SubstructMatch.h)

-greg

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