Hello,
Newbie Alert. I am trying to compile the rdkit svn version 1433 on 64
bit ununtu Lucid.
I am using the ubuntu supplied boost library , 1.40.0.1.
The rdkit build completes to 84% and stops with the following error (
see below).
I am confused as to how to get the correct version of boost which I am
imagining will fix the problem. I downloaded Release 1.43.0 , but dont
know how to point the rdkit build to this boost library since I am
new to bjam and cmake.
Any help will be greatly appreciated.
Thanks
Hari
[ 82%] Built target rdMolCatalog
Linking CXX shared library libSLNParse.so
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib/libboost_regex-mt.a(instances.o):
relocation R_X86_64_32 against
`boost::object_cache<boost::re_detail::cpp_regex_traits_base<char>,
boost::re_detail::cpp_regex_traits_implementation<char>
>::do_get(boost::re_detail::cpp_regex_traits_base<char> const&,
unsigned long)::s_data' can not be used when making a shared object;
recompile with -fPIC
/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib/libboost_regex-mt.a:
could not read symbols: Bad value
collect2: ld returned 1 exit status
make[2]: *** [Code/GraphMol/SLNParse/libSLNParse.so] Error 1
make[1]: *** [Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all] Error 2
make: *** [all] Error 2
~/rdkit/trunk/build$ dpkg --list | grep "boost"
ii libboost-all-dev 1.40.0.1
Boost C++ Libraries development files (ALL,
ii libboost-date-time1.40-dev 1.40.0-4ubuntu4
set of date-time libraries based on generic
ii libboost-date-time1.40.0 1.40.0-4ubuntu4
set of date-time libraries based on generic
ii libboost-dev 1.40.0.1
Boost C++ Libraries development files (defau
ii libboost-filesystem1.40-dev 1.40.0-4ubuntu4
filesystem operations (portable paths, itera
ii libboost-filesystem1.40.0 1.40.0-4ubuntu4
filesystem operations (portable paths, itera
ii libboost-graph1.40-dev 1.40.0-4ubuntu4
generic graph components and algorithms in C
ii libboost-graph1.40.0 1.40.0-4ubuntu4
generic graph components and algorithms in C
ii libboost-iostreams1.40-dev 1.40.0-4ubuntu4
Boost.Iostreams Library development files
ii libboost-iostreams1.40.0 1.40.0-4ubuntu4
Boost.Iostreams Library
ii libboost-math1.40-dev 1.40.0-4ubuntu4
Boost.Math Library development files
ii libboost-math1.40.0 1.40.0-4ubuntu4
Boost.Math Library
ii libboost-program-options1.40-dev 1.40.0-4ubuntu4
program options library for C++
ii libboost-program-options1.40.0 1.40.0-4ubuntu4
program options library for C++
ii libboost-python1.40-dev 1.40.0-4ubuntu4
Boost.Python Library development files
ii libboost-python1.40.0 1.40.0-4ubuntu4
Boost.Python Library
ii libboost-regex-dev 1.40.0.1
regular expression library for C++ (default
ii libboost-regex1.40-dev 1.40.0-4ubuntu4
regular expression library for C++
ii libboost-regex1.40.0 1.40.0-4ubuntu4
regular expression library for C++
ii libboost-serialization1.40-dev 1.40.0-4ubuntu4
serialization library for C++
ii libboost-serialization1.40.0 1.40.0-4ubuntu4
serialization library for C++
ii libboost-signals1.40-dev 1.40.0-4ubuntu4
managed signals and slots library for C++
ii libboost-signals1.40.0 1.40.0-4ubuntu4
managed signals and slots library for C++
ii libboost-system1.40-dev 1.40.0-4ubuntu4
Operating system (e.g. diagnostics support)
ii libboost-system1.40.0 1.40.0-4ubuntu4
Operating system (e.g. diagnostics support)
ii libboost-test1.40-dev 1.40.0-4ubuntu4
components for writing and executing test su
ii libboost-test1.40.0 1.40.0-4ubuntu4
components for writing and executing test su
ii libboost-thread1.40-dev 1.40.0-4ubuntu4
portable C++ multi-threading
ii libboost-thread1.40.0 1.40.0-4ubuntu4
portable C++ multi-threading
ii libboost-wave1.40-dev 1.40.0-4ubuntu4
C99/C++ preprocessor library
ii libboost-wave1.40.0 1.40.0-4ubuntu4
C99/C++ preprocessor library
ii libboost1.40-all-dev 1.40.0-4ubuntu4
Boost C++ Libraries development files (ALL)
ii libboost1.40-dev 1.40.0-4ubuntu4
Boost C++ Libraries development files
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