Hi TJ, On Fri, Jul 9, 2010 at 3:11 AM, TJ O'Donnell <t...@acm.org> wrote: > > I'm trying to build rdkit on a 64-bit redhat system. > > g++ (GCC) 4.1.2 20080704 (Red Hat 4.1.2-46) > > I built boost 1.43, the latest flex, and got up to this point > building rdkit > > [ 82%] Building CXX object > Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o > Linking CXX shared library libSLNParse.so > /usr/bin/ld: > /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libboost_regex.a(cpp_regex_traits.o): > relocation R_X86_64_32S against `std::basic_string<char, > std::char_traits<char>, std::allocator<char> > >::_Rep::_S_empty_rep_storage' can not be used when making a shared > object; recompile with -fPIC > /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libboost_regex.a: > could not read symbols: Bad value > collect2: ld returned 1 exit status > make[2]: *** [Code/GraphMol/SLNParse/libSLNParse.so] Error 1 > make[1]: *** [Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all] Error 2 > make: *** [all] Error 2 > > Can you help?
looks like you aren't linking against the boost that you built; instead the system boost is being used. you could verify this empirically with: % VERBOSE=1 make SLNParse You can try to fix the problem by running: % ccmake . (note the extra c) in your build directory, typing "t" to toggle advanced mode, and manually editing the value for Boost_REGEX_LIBRARY_RELEASE In the meantime, since this is a problem that repeatedly occurs, I'm going to modify the CMake files to stop using the statically linked version of libregex.. This will be in svn in the next hour. -greg ------------------------------------------------------------------------------ This SF.net email is sponsored by Sprint What will you do first with EVO, the first 4G phone? Visit sprint.com/first -- http://p.sf.net/sfu/sprint-com-first _______________________________________________ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
