Hi Greg, I have tried to install the latest RDKit on a freshly installed Ubuntu 10.10. After installing python-dev, sqlite3, numpy, bison, flex AND THE BOOST LIBRARIES VIA APT (boost 1.42), I additionally installed boost 1.4.2 in /opt/boost_1_42_0. During the cmake step flex and bison were found in /usr/lib. Several Warnings were issued during the "cmake -DBOOST_ROOT=/opt/boost_1_42_0 .." -step. Obviously the system built boost installation was erroneously used (?is this the problem if the versions of boost are the same?).
When doing the "make" the following error occurs: -----snip---------------- [ 34%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o [ 34%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o Linking CXX shared library ../../lib/libGraphMol.so [ 34%] Built target GraphMol [ 34%] [FLEX][SmartsL] Building scanner with flex /usr/bin/flex version 2.5.4 "smarts.ll", line 1: unrecognized %option: reentrant "smarts.ll", line 2: unrecognized %option: bison-bridge make[2]: *** [../Code/GraphMol/SmilesParse/lex.yysmarts.cpp] Error 1 make[1]: *** [Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all] Error 2 make: *** [all] Error 2 -----snip---------------- Here are my envs: -----snip---------------- --mar...@markus:/opt/RDKit/build$ echo $RDBASE --/opt/RDKit --mar...@markus:/opt/RDKit/build$ echo $LD_LIBRARY_PATH --/opt/RDKit/lib:/opt/RDKit/bin:/opt/boost_1_42_0:/opt/boost_1_42_1/boost --mar...@markus:/opt/RDKit/build$ echo $PYTHONPATH --:/opt/RDKit:/opt/RDKit/rdkit -----snip---------------- Does anyone have a hint? Thanks in advance, Markus ------------------------------------------------------------------------------ Centralized Desktop Delivery: Dell and VMware Reference Architecture Simplifying enterprise desktop deployment and management using Dell EqualLogic storage and VMware View: A highly scalable, end-to-end client virtualization framework. Read more! http://p.sf.net/sfu/dell-eql-dev2dev _______________________________________________ Rdkit-discuss mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
