Hi George, > I installed the RDKit nodes for KNIME (by copying the plugins folder > manually, as I too had problems with the 'update from file' feature). > Inspired by the source code that was bundled with the nodes, Did you have the same problems as Paul, i.e. KNIME complaining about some osbi.bundles not being found?
> However, this script throws the following runtime error: > Exception in thread "main" java.lang.UnsatisfiedLinkError: > org.RDKit.RDKFuncsJNI.MolFromSmiles(Ljava/lang/String;)J > at org.RDKit.RDKFuncsJNI.MolFromSmiles(Native Method) > at org.RDKit.RDKFuncs.MolFromSmiles(RDKFuncs.java:65) > > In the Eclipse lib folder, I included all the .jar files and the RDKFuncs.dll. > Any ideas??? In order to use code from native libaries Java needs to be told where to look for them. This is usually done by defining -Djava.library.path appropriately. If the application consists of Eclipse plugins (i.e. not just a bunch of jars), then there is some magic that loads the native libraries w/o needing to specify the explicitly. This is what happens wiht the KNIME plugins. So you either need to set the Java property or put your code in a plugin, which depends on org.rdkit.knime.types, and run an Eclipse application. Cheers, Thorsten -- Dr.-Ing. Thorsten Meinl room: Z815 Nycomed Chair for Bioinformatics fax: +49 (0)7531 88-5132 and Information Mining phone: +49 (0)7531 88-5016 Box 712, 78457 Konstanz, Germany ------------------------------------------------------------------------------ Beautiful is writing same markup. Internet Explorer 9 supports standards for HTML5, CSS3, SVG 1.1, ECMAScript5, and DOM L2 & L3. Spend less time writing and rewriting code and more time creating great experiences on the web. Be a part of the beta today http://p.sf.net/sfu/msIE9-sfdev2dev _______________________________________________ Rdkit-discuss mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
