Dear Jan, On Tue, Apr 24, 2012 at 6:55 PM, Jan Holst Jensen <[email protected]> wrote: > Hi, > > I am having problems install the Postgres cartridge in Postgres 9.1 on > Linux Mint 12 (which is based on Ubuntu 11.10). > > RDKit 2012_03_1 builds without any issues and all tests pass.
good so far. > The PgSQL cartridge builds fine too, and installs fine as seen below. > > jhje@linux-dev-x86 ~/RDKit_2012_03_1/Code/PgSQL/rdkit $ sudo make install > /bin/mkdir -p '/usr/lib/postgresql/9.1/lib' > /bin/mkdir -p '/usr/share/postgresql/9.1/extension' > /bin/sh > /usr/lib/postgresql/9.1/lib/pgxs/src/makefiles/../../config/install-sh > -c -m 755 rdkit.so '/usr/lib/postgresql/9.1/lib/rdkit.so' > /bin/sh > /usr/lib/postgresql/9.1/lib/pgxs/src/makefiles/../../config/install-sh > -c -m 644 ./rdkit.control '/usr/share/postgresql/9.1/extension/' > /bin/sh > /usr/lib/postgresql/9.1/lib/pgxs/src/makefiles/../../config/install-sh > -c -m 644 ./rdkit--3.1.sql '/usr/share/postgresql/9.1/extension/' > jhje@linux-dev-x86 ~/RDKit_2012_03_1/Code/PgSQL/rdkit $ That also looks ok > The same thing happens when I try to enable the 'rdkit' extension directly. > > postgres@linux-dev-x86 ~ $ psql > psql (9.1.3) > Type "help" for help. > > postgres=# create extension rdkit; > FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5 > FATAL: failed to initialize rdkit.tanimoto_threshold to 0.5 > The connection to the server was lost. Attempting reset: Succeeded. > postgres=# > This is an error message that's been reported before, but we never really did find a root cause. I will start from scratch on my VM with Ubuntu 11.10 and take careful notes as I'm doing the installation, then post those on the wiki. I don't have time to do it this morning, but I'll try and get to it tonight or tomorrow a.m. Best, -greg ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Rdkit-discuss mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
