Hi Alan,
On Aug 31, 2012, at 5:58 PM, stanley5101 <[email protected]> wrote:
> Hi,
> I'm now trying to build Rdkit (RDKit_2012_06_1) on a linux machine and things
> were going well until....
>
> [38%] [FLEX][SmartsL] Building scanner with flex /usr/bin/flex version 2.5.4
> "smarts.ll", line 1: unrecognised %option: reentrant
> "smarts.ll", line 2: unrecognised %option: bison-bridge
> make[2]: *** [../Code/GraphMol/SmilesParse/lex.yysmarts.cpp] Error 1
> make[1]: *** [Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all] Error
> 2
> make: *** [all] Error 2
>
You need a more recent version of flex. This is definitely available for Ubuntu
10.04 (that was my standard Linux build machine up until recently). I don't
remember if it's available pre-built or not, but there are some details here:
http://code.google.com/p/rdkit/wiki/BuildingWithCmake
-Greg
> It seems to be finding flex and if I type bison --help on the command line,
> stuff happens and options come up so I'm guessing this is OK. Both these
> were installed via the Synaptic package manager. I'd welcome any suggestions
> about solving this.
> thanks
> Alan
> ------------------------------------------------------------------------------
> Live Security Virtual Conference
> Exclusive live event will cover all the ways today's security and
> threat landscape has changed and how IT managers can respond. Discussions
> will include endpoint security, mobile security and the latest in malware
> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
> _______________________________________________
> Rdkit-discuss mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
------------------------------------------------------------------------------
Live Security Virtual Conference
Exclusive live event will cover all the ways today's security and
threat landscape has changed and how IT managers can respond. Discussions
will include endpoint security, mobile security and the latest in malware
threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
_______________________________________________
Rdkit-discuss mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
