Hi, I have attempted a build of RDKit_2012_06_1 on Windows. The build seems to go fine, but I get a SEGFAULT in half the tests when I run the test suite. Below follows what I have done. Any clues appreciated. ____________________________________
Followed http://code.google.com/p/rdkit/wiki/BuildingOnWindows on a Windows 2008 R2 x64 server with VS2010 installed. Note: This will be a C++-only build, no Python installed. Install binary boost 1.51 - for VS2010 only, select all library types, install into C:\boost\ (delete the "Program Files (x86)" path bit). Install cmake - all defaults chosen (does not add cmake to PATH). Install Cygwin - add 'flex' and 'bison' to package selection, otherwise use defaults. Create a user env. var; PATH=C:\RDKit_2012_06_1\lib;C:\boost\boost_1_51\lib;C:\cygwin\bin Start cmake GUI. Point it to C:\RDKit_2012_06_1\ for source code location and C:\RDKit_2012_06_1\build\ for output location. Click "Configure" Select your compiler - Visual Studio 10, "Use default native compilers". This will produce a handful of red error entries. Uncheck "RDK_BUILD_PYTHON_WRAPPERS". Click "Configure" again. Still red entries, but apparently this is some caching done by cmake ? Click "Configure" again. We now have all-white entries shown. OK. Click "Generate". Close cmake GUI. Start Visual Studio 2010. Open the RDKit.sln solution in C:\RDKit_2012_06_1\build\. Use the Configuration Manager to change the build to a "Release" "Win32" build. It will be set per default to "Debug" "Win32" by cmake. Build the "ALL_BUILD" target. Takes a while and generates warnings, but no errors. OK. Build the "INSTALL" target. OK - no issues. Test the build: Open a command prompt. cd to C:\RDKit_2012_06_1\build\ and run ctest C:\RDKit_2012_06_1\build>path PATH=C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32 \WindowsPowerShell\v1.0\;C:\RDKit_2012_06_1\lib;C:\boost\boost_1_51\lib;C:\cygwi n\bin C:\RDKit_2012_06_1\build>"c:\Program Files (x86)\CMake 2.8\bin\ctest.exe" ************************* 50% tests passed, 22 tests failed out of 44 Total Test time (real) = 31.89 sec The following tests FAILED: 2 - testDataStructs (SEGFAULT) 4 - testGrid (SEGFAULT) 13 - graphmolMolOpsTest (SEGFAULT) 15 - graphmoltestChirality (SEGFAULT) 16 - graphmoltestPickler (SEGFAULT) 18 - testDepictor (SEGFAULT) 21 - fileParsersTest1 (SEGFAULT) 22 - testMolSupplier (SEGFAULT) 23 - testMolWriter (SEGFAULT) 24 - testTplParser (SEGFAULT) 25 - testMol2ToMol (SEGFAULT) 27 - testReaction (SEGFAULT) 28 - testChemTransforms (SEGFAULT) 31 - testFragCatalog (SEGFAULT) 32 - testDescriptors (SEGFAULT) 33 - testFingerprints (SEGFAULT) 34 - testMolTransforms (SEGFAULT) 35 - testForceFieldHelpers (SEGFAULT) 36 - testDistGeomHelpers (SEGFAULT) 37 - testMolAlign (SEGFAULT) 38 - testFeatures (SEGFAULT) 39 - testShapeHelpers (SEGFAULT) Errors while running CTest _________________________________________ Any clues as to a common denominator for these failures ? I did check that the boost DLLs I have installed in C:\boost\boost_1_51\lib\ are x86 (32-bit). Cheers -- Jan Holst Jensen ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Rdkit-discuss mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
