Dear Eddie,
When trying:
"
brew install rdkit
"
=>
"
brew install rdkit
==> Downloading
http://sourceforge.net/projects/rdkit/files/rdkit/Q3_2012/RDKit_
Already downloaded: /Library/Caches/Homebrew/rdkit-2012.09.1.tgz
==> Patching
patching file CMakeLists.txt
patching file Code/GraphMol/CMakeLists.txt
Hunk #1 succeeded at 5 with fuzz 2.
patching file Code/JavaWrappers/gmwrapper/CMakeLists.txt
==> cmake -DCMAKE_INSTALL_PREFIX='/usr/local/Cellar/rdkit/2012.09.1'
-DCMAKE_BUI
==> make
ld: symbol(s) not found
collect2: ld returned 1 exit status
make[2]: *** [lib/libRDBoost.2012.09.1.dylib] Error 1
make[1]: *** [Code/RDBoost/CMakeFiles/RDBoost.dir/all] Error 2
make: *** [all] Error 2
"
I guess that the error is caused by the fact that the first Q3
installation did not run through (unfortunately, I have no output of that
one).
"
brew rm rdkit
"
does not work. Is there anything else I could try for the installation?
Cheers & Thanks,
Paul
> Hi Paul,
>
> The patch in the formula was designed for Q3 release, and it seems
> it cannot patch cleanly the SVN version. You will have to use the Q3
> release, or if you want to use the SVN version, edit the formula by
> running `brew edit rdkit` and remove the patch after the line
> showing `__END__` (i.e. removing anything after line 102).
>
> Eddie
>
> On Nov 10, 2012, at 3:58 AM, [email protected] wrote:
>
> Dear RDKitters,
>
> According to
>
http://www.mail-archive.com/[email protected]/msg02674.html
>
> I did the following on Mac OS (10.6.8):
> brew untap edc/homebrew-rdkit
> brew tap edc/homebrew-rdkit
> brew rm rdkit
> brew fetch --HEAD rdkit --force -v # make sure you see "Checked out
> revision 2234" (or slightly larger revision number) brew install --HEAD
rdkit
>
> =>
>
> When it comes to the RDKit installation itself, this error occurs:
> "
> ...
> ==> Installing rdkit
> ==> Checking out http://svn.code.sf.net/p/rdkit/code/trunk/
> ==> Patching
> patching file CMakeLists.txt
> Hunk #1 succeeded at 146 with fuzz 2 (offset -5 lines).
> patching file Code/GraphMol/CMakeLists.txt
> Hunk #1 FAILED at 5.
> 1 out of 1 hunk FAILED -- saving rejects to file Code/GraphMol/
> CMakeLists.txt.rej
> patching file Code/JavaWrappers/gmwrapper/CMakeLists.txt
> Hunk #1 FAILED at 74.
> 1 out of 1 hunk FAILED -- saving rejects to file Code/JavaWrappers/
> gmwrapper/CMakeLists.txt.rej
> Error: Failure while executing: /usr/bin/patch -f -p1 -i
000-homebrew.diff
> "
>
> Puh, I have no clue what to do . this is my first installation on Mac
OS...
>
> Cheers & Thanks,
> Paul
>
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