Hi,
This is a known issue with the formula when you install the SVN version. The
cause is that there is patch included to get the Q3 release built properly with
the latest boost. Unfortunately, the patch does not patch cleanly on the SVN
version. You have two options: either you remove the patch manually (run `brew
edit rdkit` and then remove anything after line 100) or you install the Q3
release instead of the SVN version.
Hope this helps.
Eddie
On Dec 16, 2012, at 6:33 PM, hari jayaram <[email protected]> wrote:
> Hi ,
> I am trying to follow the compiling rdkit with boost 1.49 on OSX instructions
> posted by George Papadatos on Oct 10 on the mailing list .
>
> However when I execute the final brew install rdkit step I get an error in
> applying a particular patch. This may be a homebrew error rather than a rdkit
> error ..but I am wondering if anyone knows of a workaround.
> Thanks
> Hari
>
> The detailed error is
>
> haris-macbook:~ hari$ brew install -v --HEAD rdkit --with-inchi
> /usr/bin/env python -c import numpy
> ==> Checking out http://svn.code.sf.net/p/rdkit/code/trunk/
> svn up --force /Library/Caches/Homebrew/rdkit--svn-HEAD
> At revision 2327.
> svn export --force /Library/Caches/Homebrew/rdkit--svn-HEAD
> /private/tmp/rdkit-ak06
> Export complete.
> ==> Patching
> /usr/bin/patch -f -p1 -i 000-homebrew.diff
> patching file CMakeLists.txt
> Hunk #1 succeeded at 146 with fuzz 2 (offset -5 lines).
> patching file Code/GraphMol/CMakeLists.txt
> Hunk #1 FAILED at 5.
> 1 out of 1 hunk FAILED -- saving rejects to file
> Code/GraphMol/CMakeLists.txt.rej
> patching file Code/JavaWrappers/gmwrapper/CMakeLists.txt
> Hunk #1 FAILED at 74.
> 1 out of 1 hunk FAILED -- saving rejects to file
> Code/JavaWrappers/gmwrapper/CMakeLists.txt.rej
> Error: Failure while executing: /usr/bin/patch -f -p1 -i 000-homebrew.diff
>
>
> #############################
> The Instructions I am following are
> #############################
>
>
> From George Papadatos on Oct 10th
> Hello again,
>
> Success at last! I managed to build rdkit using brew and boost 1.49.
> I think the cause of the problem was a strange combination of Mountain Lion,
> boost 1.51 and not up-to-date rdkit svn repo in HomeBrew.
>
> So to summarise:
>
> brew update
> brew uninstall boost
> brew versions boost
> cd /usr/local
> git checkout e40bc41 /usr/local/Library/Formula/boost.rb #version 1.49.0
> cd
>
> brew install boost --build-from-source
>
> brew untap edc/homebrew-rdkit
> brew tap edc/homebrew-rdkit
> brew uninstall rdkit
> brew install --HEAD rdkit
>
> Thanks for all the tips,
>
> George
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