Dear Takayuki, On Sat, Jan 26, 2013 at 5:37 AM, Taka Seri <[email protected]> wrote: > Dear all. > > I tried to build the postgresql cartridge. > (=>http://code.google.com/p/rdkit/wiki/BuildingTheCartridge) > Os X 10.7.5, RDKit ver 2012_12_1, and PostgreSQL ver 9.1.3 > I could not build the cartridge. > I got following error messages. > >> cd $RDBASE/Code/PgSQL/rdkit > Then, >> make > > g++ -I/opt/local/include -02 -Wall -Wmissing-prototypes -Wpointer-arith > -Wdeclaration-after-statement -Wendif-labels -Wformat-security > -fno-strict-aliasing -fwrapv -bundle -multiply_defined suppress -o rdkit.so > rdkit_io.o mol_op.o bfp_op.o sfp_op.o rdkit_gist.o low_gist.o guc.o cache.o > adapter.o -L/usr/local/pgsql/lib -Wl,-dead_strip_dylibs > -L/Users/takayuki/Cheminfo/RDKit/RDKit_2012_12_1//lib > -Wl,-rpath,'/Users/takayuki/Cheminfo/RDKit/RDKit_2012_12_1//lib' > -lChemTransforms -lFileParsers -lSmilesParse -lFingerprints -lSubgraphs > -lSubstructMatch -lDescriptors -lPartialCharges -lGraphMol -lDataStructs > -lRDGeometryLib -lRDGeneral -pthread -bundle_loader > /usr/local/pgsql/bin/postgres > Undefined symbols for architecture x86_64: > "_DirectFunctionCall1", referenced from: > _bfp_in in rdkit_io.o > _bfp_out in rdkit_io.o > _sfp_in in rdkit_io.o > _sfp_out in rdkit_io.o > ld: symbol(s) not found for architecture x86_64 > collect2: ld returned 1 exit status > make: *** [rdkit.so] Error 1 > > Any advice or information you could provide would be greatly appreciated.
I haven't seen this error before, but from what little I could find on the web (http://code.google.com/p/plv8js/issues/detail?id=40), it seems like this could be caused by using headers from one version of postgres and linking against another. I would suggest rebuilding the .o files and checking to see that the "-I" specs you see when you re-run make actually find the correct postgresql header files. -greg ------------------------------------------------------------------------------ Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. ON SALE this month only -- learn more at: http://p.sf.net/sfu/learnnow-d2d _______________________________________________ Rdkit-discuss mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
