Hi
I did a
export RDBASE=/home/hari/RDKit_2012_09_1
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$RDBASE/lib
Then cd into the build directory
Run cmake ..
Then run make
At around 24% I get the following error ( see below)
I installed the Ubuntu blessed libboost-python1.49-dev
Any ideas how to get around this. On a related noted the Ubuntu synaptic
package repository did have a rdkit library but it does not work and
complains
>>> from rdkit import Chem
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/local/lib/python2.7/dist-packages/rdkit/Chem/__init__.py",
line 18, in <module>
from rdkit import rdBase
ImportError: cannot import name rdBase
Any idea how to get my oqn build to work or get the synaptic provided build
to work
Thanks a tonne
Hari
Linking CXX static library libCatalogs_static.a
[ 24%] Built target Catalogs_static
Scanning dependencies of target GraphMol
[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o
[ 25%] Building CXX object
Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o
In file included from
/usr/local/include/boost/thread/detail/platform.hpp:17:0,
from /usr/local/include/boost/thread/mutex.hpp:12,
from
/home/hari/RDKit_2012_09_1/Code/GraphMol/QueryOps.h:20,
from
/home/hari/RDKit_2012_09_1/Code/GraphMol/QueryAtom.h:15,
from
/home/hari/RDKit_2012_09_1/Code/GraphMol/QueryAtom.cpp:11:
/usr/local/include/boost/config/requires_threads.hpp:29:4: error: #error
"Threading support unavaliable: it has been explicitly disabled with
BOOST_DISABLE_THREADS"
In file included from /usr/local/include/boost/thread/mutex.hpp:12:0,
from
/home/hari/RDKit_2012_09_1/Code/GraphMol/QueryOps.h:20,
from
/home/hari/RDKit_2012_09_1/Code/GraphMol/QueryAtom.h:15,
from
/home/hari/RDKit_2012_09_1/Code/GraphMol/QueryAtom.cpp:11:
/usr/local/include/boost/thread/detail/platform.hpp:67:9: error: #error
"Sorry, no boost threads are available for this platform."
In file included from
/home/hari/RDKit_2012_09_1/Code/GraphMol/QueryOps.h:20:0,
from
/home/hari/RDKit_2012_09_1/Code/GraphMol/QueryAtom.h:15,
from
/home/hari/RDKit_2012_09_1/Code/GraphMol/QueryAtom.cpp:11:
/usr/local/include/boost/thread/mutex.hpp:18:2: error: #error "Boost
threads unavailable on this platform"
In file included from
/home/hari/RDKit_2012_09_1/Code/GraphMol/QueryAtom.h:15:0,
from
/home/hari/RDKit_2012_09_1/Code/GraphMol/QueryAtom.cpp:11:
/home/hari/RDKit_2012_09_1/Code/GraphMol/QueryOps.h:313:5: error: ‘mutex’
in namespace ‘boost’ does not name a type
make[2]: *** [Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o] Error 1
make[1]: *** [Code/GraphMol/CMakeFiles/GraphMol.dir/all] Error 2
make: *** [all] Error 2
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