Hi Nikolas,
Now i am running into this error
abhikseal/usr/local/Cellar/RDKit_2013_03_2/Code/PgSQL/rdkit$make
c++ -arch x86_64 -pipe -Os -g -Wall -Wno-deprecated-declarations -Wall
-Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement
-Wendif-labels -Wformat-security -fno-strict-aliasing -fwrapv -bundle
-multiply_defined suppress -o rdkit.so rdkit_io.o mol_op.o bfp_op.o
sfp_op.o rdkit_gist.o low_gist.o guc.o cache.o adapter.o -L/usr/lib -arch
x86_64 -pipe -Os -g -Wall -Wno-deprecated-declarations
-Wl,-dead_strip_dylibs -L/usr/local/Cellar/RDKit_2013_03_2/lib
-Wl,-rpath,'/usr/local/Cellar/RDKit_2013_03_2/lib' -lChemTransforms
-lFileParsers -lSmilesParse -lFingerprints -lSubgraphs -lSubstructMatch
-lDescriptors -lPartialCharges -lGraphMol -lDataStructs -lRDGeometryLib
-lRDGeneral -pthread -bundle_loader /usr/bin/postgres
clang: warning: argument unused during compilation: '-pthread'
ld: file not found: /usr/bin/postgres
clang: error: linker command failed with exit code 1 (use -v to see
invocation)
make: *** [rdkit.so] Error 1
Abhik Seal
Indiana University Bloomington
Department of Chemical Informatics
[email protected]
*OSDD CHEMINFORMATICS*
+18123699097
http://mypage.iu.edu/~abseal/index.htm
On Wed, Jul 17, 2013 at 2:25 AM, Nikolas Fechner <[email protected]> wrote:
> **
> Dear Abhik,
> the error you see is probably related to Apple changing the path names
> for mountain lion. At several places a simple workaround is suggested (e.g.
> http://code.google.com/p/modwsgi/issues/detail?id=298), which is to
> create a symbolic link to use the default xctoolchain instead.
>
> sudo ln -s
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/
> /Applications/Xcode.app/Contents/Developer/Toolchains/OSX10.8.xctoolchain
>
> Maybe that helps.
>
>
> Kind regards,
>
> Nikolas
>
> On July 17, 2013 at 1:33 AM Abhik Seal <[email protected]> wrote:
> Hi All,
>
> I have installed Rdkit using homebrew and after installing it i was
> trying to install the Postgresql cartridge in Mac and now it is throwing an
> unique error related to Xcode tools . Is any libraries missing.
>
> usr/local/Cellar/RDKit_2013_03_2/Code/PgSQL/rdkit$make
>
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/OSX10.8.xctoolchain/usr/bin/cc
> -I/usr/local/Cellar/boost/1.53.0/ -I/usr/local/Cellar/RDKit_2013_03_2/Code
> -DRDKITVER='"007000"' -I. -I. -I/usr/include/postgresql/server
> -I/usr/include/postgresql/internal -I/usr/include/libxml2 -fPIC -c -o
> rdkit_io.o rdkit_io.c
> make:
> /Applications/Xcode.app/Contents/Developer/Toolchains/OSX10.8.xctoolchain/usr/bin/cc:
> No such file or directory
> make: *** [rdkit_io.o] Error 1
>
> Any help on this ?
>
>
>
> Abhik Seal
> Indiana University Bloomington
> Department of Chemical Informatics
> [email protected]
> *OSDD CHEMINFORMATICS*
> +18123699097
> http://mypage.iu.edu/~abseal/index.htm
>
>
>
>
>
>
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