Hi Zach,
I have not yet tried an anaconda build on the Mac. I will give it a try and
let you know if I find the source of the problem.
-greg
On Thursday, September 26, 2013, Zachary Charlop-Powers wrote:
> Hello RDKit Users,
>
> i am new to RDKit, think its feature set if very comprehensive, but have
> been having trouble setting it up. I am on Mac OSX and am using the
> Anaconda distribution. The ddc-homrew-rdkit does not work for anaconda
> because the hombres recipe does not locate the python libraries. I recently
> came across the https://code.google.com/p/rdkit/wiki/AnacondaBuild web
> page and am able to *almost* get RDKit ups nd running. Heres my issue:
>
>
> After following the directions on the AnacondaBuild webpage I configure
> my .zshrc as follows (rdkit root is my homedirectory/rdkit ):
>
> export PATH=/usr/local/bin:$PATH
> export RDBase=/Users/zachpowers/rdkit/
> export DYLD_LIBRARY_PATH=$RDBASE/lib
> export PYTHONPATH=$PYTHONPATH:$RDBASE
> export PATH=~/anaconda/bin:$PATH
>
> When I try to load RDKit I encounter an error:
>
> In [1]: from rdkit import Chem
> ---------------------------------------------------------------------------
> ImportError Traceback (most recent call last)
> <ipython-input-1-17d7acb427ab> in <module>()
> ----> 1 from rdkit import Chem
>
>
> /Users/zachpowers/anaconda/python.app/Contents/lib/python2.7/site-packages/rdkit/Chem/__init__.py
> in <module>()
> 16
> 17 """
> ---> 18 from rdkit import rdBase
> 19 from rdkit import RDConfig
> 20
>
> ImportError:
> dlopen(/Users/zachpowers/anaconda/python.app/Contents/lib/python2.7/site-packages/rdkit/rdBase.so,
> 2): Library not loaded: libRDGeneral.1.dylib
> Referenced from:
> /Users/zachpowers/anaconda/python.app/Contents/lib/python2.7/site-packages/rdkit/rdBase.so
> Reason: image not found
>
>
> I have tried changing the DYLD_Library and PYTHONPATH directories to
> include the folders with libRDGeneral.1.dylib but am still running into
> trouble.
>
>
> Has anyone run into this issue before and maybe could help me
> troubleshoot? I look forward to trying out RDKit.
>
>
> thanks,
> zach cp
>
>
>
>
>
>
> Zach Charlop-Powers
> Post-Doctoral Fellow
> Laboratory of Genetically Encoded Small Molecules
> Rockefeller University
>
> zchar...@rockefeller.edu <javascript:_e({}, 'cvml',
> 'zchar...@rockefeller.edu');>
>
>
>
>
>
>
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