On Fri, Oct 25, 2013 at 11:06 PM, William G. Scott <[email protected]> wrote:
> Hi Greg:
>
> I’ve just placed two log files on
> http://fennario.ucsc.edu/~wgscott/temp/rdkit/
>
The error messages look really familiar, but I unfortunately can't find a
reference for them. I will keep dredging around though.
One was generated using the /usr/bin/g++ compiler on 10.9, i.e.,
>
> zsh-% /usr/bin/g++ --version
> Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr
> --with-gxx-include-dir=/usr/include/c++/4.2.1
> Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn)
> Target: x86_64-apple-darwin13.0.0
> Thread model: posix
>
> which seems to be the same as
>
> zsh-% /usr/bin/clang++ --version
> Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn)
> Target: x86_64-apple-darwin13.0.0
> Thread model: posix
>
>
> The other one, which gets a bit further, was generated with fink’s g++
> version 4.8 compiler in /sw/bin/g++, i.e.,
>
> zsh-% /sw/bin/g++-4 --version
> g++-4 (GCC) 4.8.2
> Copyright (C) 2013 Free Software Foundation, Inc.
>
>
> However, as a positive control, I just installed the most recently
> available compilers for 10.8, which still works fine to compile rdkit
>
> fennario-% /usr/bin/g++ --version
> Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr
> --with-gxx-include-dir=/usr/include/c++/4.2.1
> Apple LLVM version 5.0 (clang-500.2.76) (based on LLVM 3.3svn)
> Target: x86_64-apple-darwin12.5.0
> Thread model: posix
>
> It looks almost the same as the one for 10.9, so I am even more stumped
> than before.
Any chance you could try on the 10.9 system with either a different version
of boost (1.51?) or the new RDKit beta?
We've got some evidence that it's not the compiler (I also did a clang3.3
build on my linux box without problems), so trying an alternate boost
version seems like the next logical step.
Sorry for the inconvenience,
-greg
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