Hi, I need to process large, compressed SDF file. I was planning to use SDMolSupplier but there is a problem:
1. I can't just pass a file name, as this is compressed file and if I understand, SDMolSupplier doesn't support compressed files. 2. I can't read a file to string and then call setData() method of SDMolSupplier, because size of uncompressed string will be larger than available memory. The solution would be to obtain file handler (f = gzip.open(...)) but the problem is that there is no way (at least I don't know any) to pass it to SDMolSupplier. Any ideas? Kind regards, Michał Nowotka ------------------------------------------------------------------------------ WatchGuard Dimension instantly turns raw network data into actionable security intelligence. It gives you real-time visual feedback on key security issues and trends. Skip the complicated setup - simply import a virtual appliance and go from zero to informed in seconds. http://pubads.g.doubleclick.net/gampad/clk?id=123612991&iu=/4140/ostg.clktrk _______________________________________________ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
