On 16 April 2014 19:13, Christos Kannas <[email protected]> wrote:

> Chem.PathToSubmol(mol, path)


Hi there Christos,

Many thanks for your reply (and idea of using nbviewer)

There is still something strange happening which I cannot figure out - my
atom index is a tuple with six elements - and in the resulting "submol" I
get seven atoms.  Also the ring is opened in a chain (so some of the
properties are changing).

A simple example here:
http://nbviewer.ipython.org/gist/anonymous/10964449

Any ideas?

-
Jean-Paul Ebejer
Early Stage Researcher
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