Hi Tim,
On Sun, Jul 6, 2014 at 9:38 PM, Tim Dudgeon <[email protected]> wrote:
> here's the output:
>
> Last login: Sun Jul 6 12:13:22 on console
> timbomac:~ timbo$ brew install rdkit --with-java --verbose --debug
>
<snip>
>
> ==> Downloading
> https://github.com/rdkit/rdkit/archive/Release_2014_03_1.tar.gz
> Already downloaded: /Library/Caches/Homebrew/rdkit-2014.03.1.tar.gz
> ==> Verifying rdkit-2014.03.1.tar.gz checksum
> tar xf /Library/Caches/Homebrew/rdkit-2014.03.1.tar.gz
>
>
<snip>
> -- Found SWIG: /usr/local/bin/swig (found version "3.0.2")
>
Just an FYI: even after the problem below is solved, the java wrappers for
the last release of the RDKit will probably not build with SWIG v3.x. This
has been fixed in github. You can either go back to an older version of
SWIG or install the trunk version with: brew install --HEAD rdkit
> -- Found Java:
> /System/Library/Frameworks/JavaVM.framework/Versions/1.6/Home/bin/java
> (found version "1.6.0.65")
> CMake Error at
> /usr/local/Cellar/cmake/3.0.0/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:136
> (message):
> Could NOT find JNI (missing: JAVA_AWT_LIBRARY JAVA_JVM_LIBRARY
> JAVA_INCLUDE_PATH JAVA_INCLUDE_PATH2 JAVA_AWT_INCLUDE_PATH)
> Call Stack (most recent call first):
>
> /usr/local/Cellar/cmake/3.0.0/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:343
> (_FPHSA_FAILURE_MESSAGE)
> /usr/local/Cellar/cmake/3.0.0/share/cmake/Modules/FindJNI.cmake:286
> (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
> Code/JavaWrappers/gmwrapper/CMakeLists.txt:6 (find_package)
>
This is the actual problem. cmake is unable to find the required components
of the JDK.
Do you have the JDK installed? Which version of OS/X are you using?
-greg
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