Hi Paul,
I had a similar problem and discussed it with Niko here on the list (around 7/8
May 2013).
The solution was to update to Pandas 0.11 and use this call for displaying the
table:
display(HTML(antibiotics.to_html(escape=False)))
, where 'antibiotics' ist the pandas dataframe.
I can send you the Email exchange in a separate Email to avoid spamming the
list with redundant postings.
Cheers,
Markus
On 09/26/2014 09:26 AM,
[email protected]<mailto:[email protected]> wrote:
Dear Riccardo,
upps, that did the job!
Thanks!
Bur I have another:
import os
from rdkit import RDConfig
sdfFile = os.path.join(RDConfig.RDDataDir,'NCI/first_200.props.sdf')
frame =
PandasTools.LoadSDF(sdfFile,smilesName='SMILES',molColName='Molecule',includeFingerprints=True)
frame[['Molecule']].head(2)
==>
"
Molecule
0
<img src="data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAASwAAAEsCAIAAAD2HxkiAAA
[...]
"
frame[['SMILES']].head(2)
"
SMILES
0 CC1=CC(=O)C=CC1=O
1 c1ccc2sc(SSc3nc4ccccc4s3)nc2c1
"
Cheers & Thanks,
Paul
From: Riccardo Vianello
<[email protected]><mailto:[email protected]>
To:
[email protected]<mailto:[email protected]>,
Date: 26.09.2014 09:13
Subject: Re: [Rdkit-discuss] Weird iPython PandasTools notebook look&feel
________________________________
Hi Paul,
I'm not a regular pandas user, so this comment could be misplaced, but from
this output:
On Fri, Sep 26, 2014 at 9:02 AM,
<[email protected]<mailto:[email protected]>> wrote:
frame.info<http://frame.info/> # doctest: +SKIP
<bound method DataFrame.info of <class 'pandas.core.frame.DataFrame'>
it looks like you might be looking at the textual representation of the
frame.info<http://frame.info/> method, instead of calling it and look at its output
with frame.info<http://frame.info/>(). Is this intended?
Best regards,
Riccardo
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