Hi Matthew,
I think this is related to a previous mailing list item
(https://www.mail-archive.com/rdkit-discuss@lists.sourceforge.net/msg03528.html).
It has probably something to do with the bounding boxes (they get scaled during
the map generation process). In the previous case it was enough to set
bbox_inches='tight' when saving the image to solve the problem.
I hope this helps.
Best,
Sereina
On 21 Feb 2015, at 02:28, Matthew Lardy <mla...@gmail.com> wrote:
> Hi,
>
> I am having an issue with the python similaritymaps. I am only seeing a
> fraction of the molecule. Anyone else have this issue?
>
> Thanks in advance!
> Matthew
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