(Make sure your LD_LIBRARY_PATH env variable is also set to $RDBASE\lib, as
you don't list this)
In Unix and Linux environments, the issue is that the user running apache
is a system account and has no default shell or bash environment. This has
been tackled before here:
http://comments.gmane.org/gmane.science.chemistry.rdkit.user/2812
I don't know how apache behaves under Windows. If you want to check that
your environment is set up correctly create a php page with
<?php
phpinfo();
?>
Access this page and have a look at the environment section. You can see
that all the RDKit required variables are here, in my case:
EnvironmentVariableValueLD_LIBRARY_PATH/opt/RDKit_2014_03_1/lib:
APACHE_RUN_DIR/var/run/apache2APACHE_PID_FILE/var/run/apache2/apache2.pid
PATH/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
APACHE_LOCK_DIR/var/lock/apache2LANGCAPACHE_RUN_USERwww-dataAPACHE_RUN_GROUP
www-dataAPACHE_LOG_DIR/var/log/apache2PWD/PYTHONPATH/opt/RDKit_2014_03_1:
-
Jean-Paul Ebejer
Early Stage Researcher
On 4 March 2015 at 11:39, Sujit Tangadpalliwar <
[email protected]> wrote:
> Dear all,
> Greetings...
>
> I am trying to execute python script from PHP (test.php) on XAMPP server.
> My python script (test.py) unable to import rdkit rdkitand showing error
> message "n import rdkit ImportError: No module named rdkit"
> when trying to run same python script from system through cmd or through
> python shell its running properly.
>
> My environmental variable are
> RDBASE: C:\RDKit_2013_09_1
> PYTHONPATH: %RDBASE%
> path: C:\RDKit_2013_09_1\lib
>
> My files look like:
> %%test.py
> print "111"
> from rdkit import Chem
> print "222"
>
> %%test.php
> <html>
> <body>
> <?php
> $result = shell_exec("C:/Python27/python.exe
> D:/Databases/XAMPP/htdocs/jsmol/PredictR/python_prog/asas.py 2>&1");
> echo $result;
> ?>
> </body>
> </html>
>
> %%output
> 111 Traceback (most recent call last): File "path/test.py", line 2, in
> import rdkit ImportError: No module named rdkit
>
> Please help me out to sort this problem
> Thanks in advance.
>
>
> --
> Warm regards
> Sujit R. Tangadpalliwar
> PhD Research Scholar,
> NIPER, Mohali.
>
>
>
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by Intel and developed in partnership with Slashdot Media, is your hub for all
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news, videos, case studies, tutorials and more. Take a look and join the
conversation now. http://goparallel.sourceforge.net/
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