If I add mol to pandas dataframe and try to visualize in table format using
from rdkit.Chem.Draw import IPythonConsole
and either
PandasTools.RenderImagesInAllDataFrames(images=True)
or
PandasTools.ChangeMoleculeRendering(frame)
I get the following error:
---------------------------------------------------------------------------AttributeError
Traceback (most recent call
last)/Users/nathan/anaconda/envs/cndapy3b/lib/python3.5/site-packages/IPython/core/formatters.py
in __call__(self, obj) 341 method =
_safe_get_formatter_method(obj, self.print_method) 342
if method is not None:--> 343 return method() 344
return None 345 else:
/Users/nathan/anaconda/envs/cndapy3b/lib/python3.5/site-packages/pandas/core/frame.py
in _repr_html_(self) 566 567 return
self.to_html(max_rows=max_rows, max_cols=max_cols,--> 568
show_dimensions=show_dimensions, notebook=True)
569 else: 570 return None
/Users/nathan/anaconda/envs/cndapy3b/lib/python3.5/site-packages/rdkit/Chem/PandasTools.py
in patchPandasHTMLrepr(self, **kwargs) 129 Patched default
escaping of HTML control characters to allow molecule image rendering
dataframes 130 '''--> 131 formatter =
pd.core.format.DataFrameFormatter(self,buf=None,columns=None,col_space=None,colSpace=None,header=True,index=True,
132
na_rep='NaN',formatters=None,float_format=None,sparsify=None,index_names=True,
133 justify = None,
force_unicode=None,bold_rows=True,classes=None,escape=False)
AttributeError: module 'pandas.core' has no attribute 'format'
This was on a clean install done today via conda. mol data frame was added
using MolFromInchi.
Am I doing something wrong, or should I file a bug report?
Thanks and regards,
Nathan
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