As Paolo points out, this really just integrates the cartridge tests into the rest of the test suite.
@Gianluca: If you need to be able to build the cartridge and run the RDKit test suite without running the cartridge tests, it would be easy for us to add an RDK_RUN_PGSQL_TESTS option that defaults to ON but that you can turn OFF with your build script. -greg On Mon, Aug 8, 2016 at 10:49 AM, Paolo Tosco <[email protected]> wrote: > Hi Gianluca, > > the README ("After building the RDKit, carry out the following steps" > section) briefly explains what needs to be done to install the cartridge > and get the PgSQL test to work. The user which will be running the test > needs to have administrator privileges on PostgresSQL as it will need to > create a new database, load the cartridge and modify some settings. > > Actually all of these requirements were already there before > implementing the CMake-integrated PgSQL build: one needed to be root to > stop the service, install the cartridge, restart the service, and then > PostgreSQL administrator rights were needed to run the tests. The only > difference is that now the test is part of the ctest suite rather than > being separate. > > Ciao, > p. > > On 08/06/16 12:00, Gianluca Sforna wrote: > > Thanks for the patch Paolo. > > > > Is test 97 new? It seems it wants to use the Postgres server and > > fails, I am afraid it is not easy to have it working at build time. > > > > On Fri, Aug 5, 2016 at 11:45 AM, Gianluca Sforna <[email protected]> > wrote: > >> Anyone ever tested this combo? > >> > >> I am currently getting: > >> > >> /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security > >> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong > >> --param=ssp-buffer-size=4 -grecord-gcc-switches > >> -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic > >> -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing > >> -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro > >> -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared > >> -Wl,-soname,librdkit.so -o librdkit.so > >> CMakeFiles/rdkit.dir/adapter.cpp.o CMakeFiles/rdkit.dir/bfp_op.c.o > >> CMakeFiles/rdkit.dir/cache.c.o CMakeFiles/rdkit.dir/guc.c.o > >> CMakeFiles/rdkit.dir/low_gist.c.o CMakeFiles/rdkit.dir/mol_op.c.o > >> CMakeFiles/rdkit.dir/rdkit_gist.c.o CMakeFiles/rdkit.dir/rdkit_io.c.o > >> CMakeFiles/rdkit.dir/rxn_op.c.o CMakeFiles/rdkit.dir/sfp_op.c.o > >> -Llib64 -lpq ../../../lib/libRDInchiLib.so.1.2016.03.2 -lInchi > >> ../../../lib/libMolHash.so.1.2016.03.2 > >> ../../../lib/libFMCS.so.1.2016.03.2 > >> ../../../lib/libChemReactions.so.1.2016.03.2 > >> ../../../lib/libChemTransforms.so.1.2016.03.2 > >> ../../../lib/libFingerprints.so.1.2016.03.2 > >> ../../../lib/libDescriptors.so.1.2016.03.2 > >> ../../../lib/libPartialCharges.so.1.2016.03.2 > >> ../../../lib/libSubstructMatch.so.1.2016.03.2 > >> ../../../lib/libDepictor.so.1.2016.03.2 -lboost_thread -lboost_system > >> -lpthread -linchi ../../../lib/libFileParsers.so.1.2016.03.2 > >> ../../../lib/libSmilesParse.so.1.2016.03.2 > >> ../../../lib/libSubgraphs.so.1.2016.03.2 > >> ../../../lib/libGraphMol.so.1.2016.03.2 > >> ../../../lib/libRDGeometryLib.so.1.2016.03.2 > >> ../../../lib/libDataStructs.so.1.2016.03.2 > >> ../../../lib/libRDGeneral.so.1.2016.03.2 -lboost_thread -lboost_system > >> -lpthread -Wl,-rpath,lib64:/builddir/build/BUILD/rdkit-Release_ > 2016_03_2/python2/lib > >> /usr/bin/ld: cannot find -lInchi > >> > >> as it seems the CMakeFile is hardcoding the "Inchi" name as library to > >> search for > >> > >> Maybe it should be using the "FindInchi" macro and avoid putting the > >> explicit name there? > >> > >> Not sure how to patch it. > >> > >> -- > >> Gianluca Sforna > >> > >> http://plus.google.com/+gianlucasforna - http://twitter.com/giallu > >> Tinker Garage - http://tinkergarage.it > > > > > > > ------------------------------------------------------------ > ------------------ > _______________________________________________ > Rdkit-discuss mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss >
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