Dear All

I am a new entry in this discussion forum and also for RDKit

I am trying to calculate shape tanimoto  and rms between two molecules (PDB
files) from 3D functionality of RDKit.
Code is working fine for the pdb files given in test data.
But gives error whenever I uses other pdb files

>>> rms = rdMolAlign.AlignMol(mol1, mol2)
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
RuntimeError: std::exception
It looks like there is a problem in input files, but help required


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