On the plus side, when drawing PubChem CID 5057 from a 3D SDF before and after our canonicalization, RDKit draws a mirror image, but otherwise the same 2D structure. OB's "after" version is attached: enjoy the 7-bond carbon in the ring.
;) -- Dimitri Maziuk Programmer/sysadmin BioMagResBank, UW-Madison -- http://www.bmrb.wisc.edu
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