Any advice on getting RDKit to read in SDF files that use bond order '4' to
mark bonds as aromatic and don't have explicit hydrogen? For example,
imagine two fused heterocycles where the hydrogen isn't really known. I
have SDF files that just mark the bond orders as '4', aromatic, and don't
even try to specify which tautomer it wants to represent.
Does this enter the same category as OpenBabel considering c1nnnn1 to be
tetrazole and not specifying where the hydrogen is?
Any tips for getting RDKit to input these structures and clean them up?
Thanks,
Brian
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