Dear Rintarou, did you check that you built boost 1.62 against your own self-built version of Python 2.7 rather than against system Python? Alternatively, you might be missing a Python module. You may get more information about why, e.g., test 7 failed issuing the command:
ctest -I 7,7 -V Best, Paolo On 02/01/17 09:00, 鈴木 倫太郎 wrote: > Dear All, > > I have been used RDKit 2015_03_1 with self-build version of python 2.7 and > boost 1.62 on CentOS 5.11. > Now I tried to built and install 2016_09_3 in the same environment and I got > 13 errors after ctest. > > > 88% tests passed, 13 tests failed out of 112 > > The following tests FAILED: > 7 - pyBV (Failed) > 8 - pyDiscreteValueVect (Failed) > 9 - pySparseIntVect (Failed) > 13 - testPyGeometry (Failed) > 64 - pyMolTransforms (Failed) > 70 - pyDistGeom (Failed) > 72 - pyMolAlign (Failed) > 74 - pyChemicalFeatures (Failed) > 95 - pyGraphMolWrap (Failed) > 97 - pyTestTrajectory (Failed) > 102 - pySimDivPickers (Failed) > 108 - pythonTestDirDataStructs (Failed) > 112 - pythonTestDirChem (Failed) > Errors while running CTest > > > I checked following commands. I could not find problems. > > > $ ldd $RDBASE/rdkit/Chem/rdchem.so > linux-vdso.so.1 => (0x00007fff5e3fd000) > libSmilesParse.so.1 => /home/nmr/RDKit/lib/libSmilesParse.so.1 > (0x00002b7ccfaa0000) > libChemTransforms.so.1 => /home/nmr/RDKit/lib/libChemTransforms.so.1 > (0x00002b7ccfcf6000) > libSubstructMatch.so.1 => /home/nmr/RDKit/lib/libSubstructMatch.so.1 > (0x00002b7ccff39000) > libGraphMol.so.1 => /home/nmr/RDKit/lib/libGraphMol.so.1 > (0x00002b7cd0167000) > libRDGeometryLib.so.1 => /home/nmr/RDKit/lib/libRDGeometryLib.so.1 > (0x00002b7cd04c9000) > libRDGeneral.so.1 => /home/nmr/RDKit/lib/libRDGeneral.so.1 > (0x00002b7cd06e4000) > libRDBoost.so.1 => /home/nmr/RDKit/lib/libRDBoost.so.1 > (0x00002b7cd08ff000) > libboost_python.so.1.62.0 => > /usr/local/boost_1_62_0/lib/libboost_python.so.1.62.0 (0x00002b7cd0ccb000) > libboost_thread.so.1.62.0 => > /usr/local/boost_1_62_0/lib/libboost_thread.so.1.62.0 (0x00002b7cd0f1f000) > libboost_system.so.1.62.0 => > /usr/local/boost_1_62_0/lib/libboost_system.so.1.62.0 (0x00002b7cd1145000) > libboost_serialization.so.1.62.0 => > /usr/local/boost_1_62_0/lib/libboost_serialization.so.1.62.0 > (0x00002b7cd1349000) > libDataStructs.so.1 => /home/nmr/RDKit/lib/libDataStructs.so.1 > (0x00002b7cd1599000) > libpthread.so.0 => /lib64/libpthread.so.0 (0x00002b7cd18fd000) > libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x00002b7cd1b1a000) > libm.so.6 => /lib64/libm.so.6 (0x00002b7cd1e1a000) > libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00002b7cd209d000) > libc.so.6 => /lib64/libc.so.6 (0x00002b7cd22ac000) > libdl.so.2 => /lib64/libdl.so.2 (0x00002b7cd2605000) > libutil.so.1 => /lib64/libutil.so.1 (0x00002b7cd280a000) > librt.so.1 => /lib64/librt.so.1 (0x00002b7cd2a0d000) > /lib64/ld-linux-x86-64.so.2 (0x0000003ada200000) > > > $ python -c 'from rdkit import rdBase; print rdBase.__file__' > /home/nmr/RDKit/rdkit/rdBase.so > > > Can you please suggest any solutions? > > Thank you, > Rintarou > > ------------------------------------------------------------ > Suzuki, Rintarou > National Agriculture and Food Research Organization > Tsukuba, Japan > > ------------------------------------------------------------------------------ > Check out the vibrant tech community on one of the world's most > engaging tech sites, SlashDot.org! http://sdm.link/slashdot > _______________________________________________ > Rdkit-discuss mailing list > Rdkit-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, SlashDot.org! http://sdm.link/slashdot _______________________________________________ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
