Hi (Riccardo).
I have trouble with the conda build in Docker (I just updated to the most
recent version which triggered the new build) - below is the error trace. I
took the original Docker file and just edited out all non-Python35 builds -
so it does only the Python35 builds and ends somewhere when
rdkit-postgres95 is built. Does somebody have the same problem?
Thanks,
Markus
make[3]: Entering directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/port'
make -C ../backend submake-errcodes
make[3]: Entering directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend/catalog'
cd ../../../src/include/catalog && /bin/sh ../../../config/missing perl
./duplicate_oids
make -C utils probes.h
***
ERROR: Perl is missing on your system. It is needed unless you are building
from an unmodified official distribution of PostgreSQL.
***
make[3]: Leaving directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend/catalog'
make[3]: *** [postgres.bki] Error 1
make[2]: *** [submake-schemapg] Error 2
make[2]: *** Waiting for unfinished jobs....
make[3]: Entering directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend/utils'
sed -f ./Gen_dummy_probes.sed probes.d >probes.h
make[3]: Leaving directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend/utils'
make[4]: Entering directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend'
make[4]: Nothing to be done for `submake-errcodes'.
make[4]: Leaving directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend'
make[3]: Leaving directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/port'
make -C ../../src/common all
make[3]: Entering directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/common'
make -C ../backend submake-errcodes
make[4]: Entering directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend'
make[4]: Nothing to be done for `submake-errcodes'.
make[4]: Leaving directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend'
make[3]: Leaving directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/common'
make[2]: Leaving directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend'
make[1]: *** [all-backend-recurse] Error 2
make[1]: Leaving directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src'
make: *** [all-src-recurse] Error 2
Traceback (most recent call last):
File "/home/rdkit/miniconda/bin/conda-build", line 6, in <module>
path in binary file share/terminfo/w/wsvt25
Detected hard-coded path in binary file share/terminfo/w/wsvt25m
Detected hard-coded path in binary file share/terminfo/x/x68k
Detected hard-coded path in binary file share/terminfo/x/x68k-ite
Detected hard-coded path in binary file share/terminfo/z/z29a
Detected hard-coded path in binary file share/terminfo/z/z29a-kc-bc
Detected hard-coded path in binary file share/terminfo/z/z29a-kc-uc
Detected hard-coded path in binary file share/terminfo/z/z29a-nkc-bc
Detected hard-coded path in binary file share/terminfo/z/z29a-nkc-uc
Detected hard-coded path in binary file share/terminfo/z/z340
Detected hard-coded path in binary file share/terminfo/z/z340-nam
Detected hard-coded path in text file bin/ncurses6-config
Detected hard-coded path in text file share/man/man1/captoinfo.1m
Detected hard-coded path in text file share/man/man1/infocmp.1m
Detected hard-coded path in text file share/man/man1/infotocap.1m
Detected hard-coded path in text file share/man/man1/ncurses6-config.1
Detected hard-coded path in text file share/man/man1/tic.1m
Detected hard-coded path in text file share/man/man1/toe.1m
Detected hard-coded path in text file share/man/man1/tput.1
Detected hard-coded path in text file share/man/man1/tset.1
Detected hard-coded path in text file share/man/man3/ncurses.3x
Detected hard-coded path in text file share/man/man3/panel.3x
Detected hard-coded path in text file share/man/man5/term.5
Detected hard-coded path in text file share/man/man5/terminfo.5
Detected hard-coded path in text file share/man/man7/term.7
/home/rdkit/bld/linux-64/ncurses-6.0-0.tar.bz2
Nothing to test for: /home/rdkit/bld/linux-64/ncurses-6.0-0.tar.bz2
BUILD START: postgresql95-9.5.2-py35_0
The following NEW packages will be INSTALLED:
libiconv: 1.14-0
libxml2: 2.9.4-0
libxslt: 1.1.29-0
ncurses: 6.0-0 local
openssl: 1.0.2k-1
pip: 9.0.1-py35_1
python: 3.5.3-1
readline: 6.2-2
setuptools: 27.2.0-py35_0
sqlite: 3.13.0-0
tk: 8.5.18-0
wheel: 0.29.0-py35_0
xz: 5.2.2-1
zlib: 1.2.8-3
Source cache directory is: /home/rdkit/bld/src_cache
Downloading source to cache: postgresql-9.5.2.tar.bz2
Downloading
https://ftp.postgresql.org/pub/source/v9.5.2/postgresql-9.5.2.tar.bz2
Success
Applying patch:
u'/home/rdkit/conda-rdkit/postgresql95/prefer_ncurses_to_termcap.patch'
Package: postgresql95-9.5.2-py35_0
source tree in:
/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2
sys.exit(conda_build.cli.main_build.main())
File
"/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/cli/main_build.py",
line 334, in main
execute(sys.argv[1:])
File
"/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/cli/main_build.py",
line 325, in execute
noverify=args.no_verify)
File
"/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/api.py",
line 97, in build
need_source_download=need_source_download, config=config)
File
"/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/build.py",
line 1503, in build_tree
config=config)
File
"/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/build.py",
line 1135, in build
utils.check_call_env(cmd, env=env, cwd=src_dir)
File
"/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/utils.py",
line 620, in check_call_env
return _func_defaulting_env_to_os_environ(subprocess.check_call,
*popenargs, **kwargs)
File
"/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/utils.py",
line 616, in _func_defaulting_env_to_os_environ
return func(_args, **kwargs)
File "/home/rdkit/miniconda/lib/python2.7/subprocess.py", line 186, in
check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/bin/bash', '-x', '-e',
'/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/conda_build.sh']'
returned non-zero exit status 2
The command '/bin/sh -c CONDA_PY=35 conda build boost --quiet
--no-anaconda-upload && CONDA_PY=35 conda build nox --quiet
--no-anaconda-upload && CONDA_PY=35 conda build cairo_nox --quiet
--no-anaconda-upload && CONDA_PY=35 conda build cairocffi --quiet
--no-anaconda-upload && CONDA_PY=35 conda build eigen --quiet
--no-anaconda-upload && CONDA_PY=35 conda build rdkit --quiet
--no-anaconda-upload && CONDA_PY=35 conda build postgresql95 --quiet
--no-anaconda-upload && CONDA_PY=35 conda build rdkit-postgresql95
--quiet --no-anaconda-upload && CONDA_NPY=110 conda build rdkit --quiet
--no-anaconda-upload && CONDA_PY=35 CONDA_NPY=110 conda build rdkit
--quiet --no-anaconda-upload' returned a non-zero code: 1
------------------------------------------------------------------------------
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