On 16/06/2017 12:08, JP wrote:
Hi Folks,
Must have been eons ago last time I posted to this mailing list. The italians have a saying
"chi non muore si rivede".
I am trying to install the RDKit (release 2017_03_2) from source, without conda, and I
thought this will be a breeze. But I am getting an error. I am pretty sure this is because
of the boost version I am using (1.61).
The error is:
[ 62%] Linking CXX executable testReaction
../../../lib/libRDKitChemReactions.so.1.2017.03.2: undefined reference to
`boost::archive::text_iarchive_impl<boost::archive::text_iarchive>::load_override(boost::archive::class_name_type&)'
../../../lib/libRDKitChemReactions.so.1.2017.03.2: undefined reference to
`boost::archive::archive_exception::archive_exception(boost::archive::archive_exception
const&)'
collect2: error: ld returned 1 exit status
Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make:116:
recipe for
target 'Code/GraphMol/ChemReactions/testReaction' failed
make[2]: *** [Code/GraphMol/ChemReactions/testReaction] Error 1
CMakeFiles/Makefile2:4157: recipe for target
'Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/all' failed
make[1]: *** [Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/all]
Error 2
Makefile:160: recipe for target 'all' failed
make: *** [all] Error 2
If you are using an outdated version of boost, this is not the most elegant way for RDKit to
tell you so.
But I don't think that that's the case. I think that you are not linking with the correct
boost libraries. Hard to say at the moment.
$ make VERBOSE=1
As I side note, but this is just a deprecation warning, I do get a ton of these,
/opt/boost_1_61_0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note:
#pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is
deprecated")
I see such things also - I comment out the pragmas in the header.
Paul.
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