Dear Paul,
>From your response, I think your ipywidgets is working fine. Now, you are
facing trouble with py3Dmol.
py3Dmol basically generates JavaScript codes (3Dmol.js) and IPython injects
those in web browser. So, will you kindly share what error printed in your
browser console?
Off topic: The following link shows how to see browser console from Google
Chrome https://developers.google.com/web/tools/chrome-devtools/console/
Best regards,
Malitha
On Tue, Jun 20, 2017 at 3:33 PM, Paul Czodrowski <
paul.czodrow...@merckgroup.com> wrote:
> Dear Malitha,
>
> Dear RDKitters,
>
>
>
> thanks a lot for your investigations!
>
>
>
> Indeed, this issue seems somehow browser-related; please check the
> attachment which shows the output in a different browser (Firefox@openSUSE
> vs. IE11@Win7 from my previous mail).
>
>
>
> I’m now able to find a button-like widget but no structure…
>
>
>
>
>
> This presumably looks like off-topic for this mailing list. However, if
> anyone can point into the right direction: that would be highly appreciated.
>
>
>
>
>
> Cheers,
> Paul
>
>
>
>
>
>
>
>
>
> ________________________________________
> Paul Czodrowski, PhD
>
>
>
> Global Research & Development | Discovery Technologies
>
>
>
> *Merck*
>
>
>
> Merck KGaA | Frankfurter Str. 250 | Postcode: A019/001 | 64293 Darmstadt |
> Germany
>
> Phone: +49 6151 72 3218 <+49%206151%20723218>
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>
> *Von:* Malitha Kabir [mailto:malitha12...@gmail.com]
> *Gesendet:* Dienstag, 20. Juni 2017 10:58
> *An:* Paul Czodrowski <paul.czodrow...@merckgroup.com>
> *Cc:* rdkit-discuss@lists.sourceforge.net
>
> *Betreff:* Re: [Rdkit-discuss] ipywidgets & py3Dmol
>
>
>
> Dear Paul,
>
>
>
> Kindly consider a few pieces of information provided below.
>
>
>
> For your 2nd question:
>
>
>
> Widgets are rendered in web browsers. So, in my sense, Python 2.7.13
> instead of Python 3.5.3 should not cause problem with widget rendering.
> Python 2.7.13 should work. My conda install uses Python 2.7.12 and it is
> working well with the notebook you attached.
>
>
>
> For your 1st question:
>
>
>
> The following stackoverflow discussion might help.
>
> https://stackoverflow.com/questions/36351109/ipython-
> notebook-ipywidgets-does-not-show
>
>
>
> Kindly consider the readme of ipywidgets. https://github.com/jupyter-
> widgets/ipywidgets/blob/master/README.md As per their suggestions, if you
> install ipywidgets using pip then you need to enable widgetsnbextension
> (widgets notebook extension) manually.
>
>
>
> Running the following line from shell will do that for you.
>
> jupyter nbextension enable --py --sys-prefix widgetsnbextension
>
> Kindly try out the following code. It should show a slider in your
> notebook if everything is fine.
>
>
>
> from __future__ import print_function
>
> import ipywidgets as widgets
>
>
>
> slider = widgets.SelectionSlider(
>
> options=[1,2,3],
>
> value=1
>
> )
>
> slider
>
>
>
> Probably trying with different web browser may help (I am not sure though)
>
>
>
> Best Regards,
>
> Malitha
>
>
>
>
>
>
>
> On Tue, Jun 20, 2017 at 1:56 PM, Paul Czodrowski <
> paul.czodrow...@merckgroup.com> wrote:
>
> Dear Axel,
>
>
>
> thanks a lot for this very helpful information!
>
>
>
>
>
> The only difference I could figure out:
>
> Python 2.7.13 instead of Python 3.5.3
>
>
>
> @RDKitters:
>
> Can this really cause such a different behavior?
>
>
>
> Cheers,
>
> Paul
>
>
>
> P.S.: I’m aware of http://www.python3statement.org/ ;)
>
>
>
>
>
> *Von:* Axel Pahl [mailto:axelp...@gmx.de]
> *Gesendet:* Dienstag, 20. Juni 2017 09:35
> *An:* rdkit-discuss@lists.sourceforge.net
> *Betreff:* Re: [Rdkit-discuss] ipywidgets & py3Dmol
>
>
>
> Hi Paul,
>
> I just tried the example Notebook that you provided and it runs just as in
> Greg's blog post, i.e. with the interactive slider (see attached
> screenshot).
> This is the configuration I used (in Anaconda):
>
> python 3.5.3
> rdkit 2017.03.2
> notebook 5.0.0
> ipywidgets 6.0.0
> py3Dmol 0.6.3
>
> Kind regards,
> Axel
>
> On 20.06.2017 07:48, Paul Czodrowski wrote:
>
> Dear RDKitters,
>
>
>
> When trying to re-run Greg’s wonderful blog entry about the py3Dmol
> integration (https://rdkit.blogspot.de/2016/07/using-ipywidgets-and-
> py3dmol-to-browse.html ), I’m getting a different behavior (check the
> attachment with a screenshot and the jupyter notebook).
>
>
>
> Any help would be appreciated.
>
>
>
> Cheers,
> Paul
>
>
>
>
>
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