Hi Jordan,

On Thu, Oct 5, 2017 at 6:48 AM, Jordan McCone <urlolj0...@gmail.com> wrote:

> I have a .smi file which has a number of smiles strings in it. I would
> like to generate a single 3D conformer using ETKDG for every smiles string
> in the list,

If you google around, you will find a number of emails, posts, scripts, and
even RDKit "getting started" and cookbook entries for generating
conformations. Reading in a .smi file is covered in the Getting Started
guide, as well as other places.

> and then get the output as a single .mol2 file.

The RDKit does not create .mol2 files, so I'm afraid you're out of luck
there. Any chance that you can provide another format?

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