Greg,
I have boost version 1.64. I found reference to this error on the web,
always in reference to boost version 1.64. But what I don't see is whether
this is fixed in later or previous versions.
I forgot to include the first error I get, actually during the cmake stage,
when it tries to download the maeparser tarball. Somehow the curl command
isn't downloading the file with the right name. I get this error
- Found Threads: TRUE
-- Boost version: 1.64.0
-- Found the following Boost libraries:
-- serialization
== Using strict rotor definition
Downloading
https://codeload.github.com/schrodinger/maeparser/tar.gz/83368293dcc0eb07562dadfb7728b8d18d23a6cb.
..
% Total % Received % Xferd Average Speed Time Time Time
Current
Dload Upload Total Spent Left
Speed
100 24984 100 24984 0 0 73460 0 --:--:-- --:--:-- --:--:--
274k
CMake Error at Code/cmake/Modules/RDKitUtils.cmake:198 (MESSAGE):
The md5 checksum for
base/rdkit/External/CoordGen/master.tar.gz
is incorrect; expected: 32c0c3b315bba49fbf4c41a07aa58528, found:
d41d8cd98f00b204e9800998ecf8427e
Call Stack (most recent call first):
External/CoordGen/CMakeLists.txt:9 (downloadAndCheckMD5)
If I go to the Coordgen directory after getting this error, I see the
following
drwxr-xr-x 3 jasonb users 4.0K Apr 19 13:06 .
drwxr-xr-x 7 jasonb users 4.0K Apr 19 13:05 ..
-rw-r--r-- 1 jasonb users 25K Apr 19 13:06
83368293dcc0eb07562dadfb7728b8d18d23a6cb
-rw-r--r-- 1 jasonb users 2.8K Apr 19 13:05 CMakeLists.txt
-rw-r--r-- 1 jasonb users 5.6K Apr 19 13:05 CoordGen.h
-rw-r--r-- 1 jasonb users 0 Apr 19 13:06 master.tar.gz
-rw-r--r-- 1 jasonb users 12K Apr 19 13:05 test.cpp
drwxr-xr-x 2 jasonb users 4.0K Apr 19 13:05 Wrap
So the curl command downloaded the tarball as
"83368293dcc0eb07562dadfb7728b8d18d23a6cb",
and created an empty file "master.tar.gz" which of course doesn't match the
md5 sum. I definitely don't know enough about cmake, or curl for that
matter, to see why this is happening. But if I manually download the
maeparser, the coordgenlibs, and the rapidjson files and put them in
External/ then it works fine.
Thanks,
Jason
Jason Biggs
On Thu, Apr 19, 2018 at 12:42 PM, Greg Landrum <greg.land...@gmail.com>
wrote:
> Which version of boost is that?
>
> On Thu, 19 Apr 2018 at 19:34, Jason Biggs <jasondbi...@gmail.com> wrote:
>
>> Trying to build on Scientific Linux release 6.9, and I'm getting boost
>> serialization errors, both on the recent release branch and on master
>>
>>
>> In file included from base/Boost/include/boost/
>>> numeric/ublas/vector.hpp:21:0,
>>> from base/Boost/include/boost/
>>> numeric/ublas/matrix.hpp:18,
>>> from base/rdkit/Code/GraphMol/Substruct/ullmann.hpp:41,
>>> from base/rdkit/Code/GraphMol/
>>> Substruct/SubstructMatch.cpp:29:
>>> base/Boost/include/boost/numeric/ublas/storage.hpp: In member function
>>> ‘void boost::numeric::ublas::unbounded_array<T,
>>> ALLOC>::serialize(Archive&, unsigned int)’:
>>> base/Boost/include/boost/numeric/ublas/storage.hpp:299:18: error:
>>> ‘make_array’ is not a member of ‘boost::serialization’
>>> ar & serialization::make_array(data_, s);
>>> ^~~~~~~~~~~~~
>>> base/Boost/include/boost/numeric/ublas/storage.hpp: In member function
>>> ‘void boost::numeric::ublas::bounded_array<T, N,
>>> ALLOC>::serialize(Archive&, unsigned int)’:
>>> base/Boost/include/boost/numeric/ublas/storage.hpp:494:18: error:
>>> ‘make_array’ is not a member of ‘boost::serialization’
>>> ar & serialization::make_array(data_, s);
>>
>>
>>
>> If I add
>>
>> #include <boost/serialization/array_wrapper.hpp>
>>
>>
>> to the SubstructMatch.cpp file, as instructed here
>> https://stackoverflow.com/q/44534516/4712538, then compilation continues
>> fine.
>>
>>
>> Jason
>> ------------------------------------------------------------
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>
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