Hi Changge,

for guidelines, check out this blog post:
http://rdkit.blogspot.fi/2015/02/new-drawing-code.html

Also, you can set the highlight radius with "highlightAtomRadii" parameter.

Cheers,
Juuso

On Thu, May 17, 2018 at 1:53 PM, Changge Ji <chicago...@gmail.com> wrote:
> Dear Rdkit Users,
>
> I'm trying to draw molecule and hightlight atom according to some kind of
> property value (such as partial charge).
>
> The color on each atom is determined by property value.  Just like the file
> attached.
>
> Is this possible in rdkit ?
>
> Many thanks.
>
> Best Regards,
> Changge
>
>
>
>
>
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