Thanks, Greg, it worked!
Colin
On Tue, Jun 26, 2018 at 4:24 AM Greg Landrum <greg.land...@gmail.com> wrote:
> Hi Colin,
>
> It sounds like you did a "Save As" while viewing the notebook page in
> GitHub. This gets you an HTML file, not the ipynb file.
> To get the file itself, click the "Raw" button on the page in github and
> then do a "save as" on the unformatted JSON that you get.
>
> I hope this helps,
> -greg
>
> On Mon, Jun 25, 2018 at 1:26 PM Colin Lam <yhco...@gmail.com> wrote:
>
>> Hello,
>>
>> I am having trouble opening Jupyter notebooks on
>> https://github.com/rdkit/rdkit-tutorials and wondering if you might help.
>>
>> I saved one of the notebooks, e.g. 001_ReadingMolecules1.ipynb (
>> https://github.com/rdkit/rdkit-tutorials/blob/master/notebooks/001_ReadingMolecules1.ipynb)
>> locally. Then I did "jupyter notebook" and navigated to the directory
>> containing the .ipynb file. When I clicked on the link to that file, a new
>> browser window opened with the following error:
>>
>> Unreadable Notebook:
>> /home/chronos/user/Downloads/001_ReadingMolecules1.ipynb
>> NotJSONError("Notebook does not appear to be JSON:
>> '\\n\\n\\n\\n\\n\\n<!DOCTYPE html>\\n<html lang...",)
>>
>> I was already using the Jupyter notebook specifically installed within
>> the same conda environment (as opposed to the default notebook) that has
>> RDKit. I was also able to open other simple non-RDKit notebooks.
>>
>> Wondering if I might be missing something obvious here, as I am new to
>> both RDKit and Jupyter notebook. I have been searching online for this
>> issue but to no avail. I'd be grateful if someone could point me in a right
>> direction.
>>
>> Thanks a lot for reading,
>> Colin
>>
>>
>>
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