Hi all, Off-topic, I know, so please reply to me via private email.
I'm writing a paper about chemfp and the FPS format, and this seemed the best place to get broader feedback. I started chemfp to, among other things, promote the FPS format as a common exchange format for fingerprint data. I want to include information in the paper about the level of success of the program and of the format. Could you tell me (by private email): 1) Are you using the FPS format outside of chemfp, and/or do you know of others using it? 2) What other tools support the FPS format? I know of support in Open Babel, CACTVS, and the 'fingerprint' package for R. I'm also interested in in-house tools. The FPS format started in part as way to reduce the high number of in-house formats. I'm not going to cite the tools or even the company, I just want to say if it's being used by in-house tools. 3) Are there fingerprint data sets available in FPS format? I know that ChEMBL releases RDKit Morgan fingerprints as part of their data distribution. I don't know of any others. 4) Do you use chemfp, and/or do you have a sense of how many others use chemfp? It seems that a lot of people use it. I have very little in the way of concrete numbers. There are 20 downloads/month from the chemfp web site and 15/month through BioConda. An unknown number of people install it through PyPI/'pip install chemfp', or chemfp is installed by a sysadmin, or available through something like the ChemicalToolBoX for Galaxy. Cheers, Andrew da...@dalkescientific.com _______________________________________________ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss