Hi all,
I was wondering if there is a way how you can tag <path> elements (bonds) in the svg created by rdkit. i.e. transform something like this: <path d='M 265.658,263.25 342.74,218.746' style='...' /> <path d='M 342.74,218.746 419.822,174.241' style='...' /> Into: <path bondId='1' d='M 265.658,263.25 342.74,218.746' style='...' /> <path bondId='2' d='M 342.74,218.746 419.822,174.241' style='...' /> Or similar. I’ve found possibility of tagging atoms in the SVG using Draw.rdMolDraw2D.MolDraw2DSVG.drawOptions() method that exposes property includeAtomTags. This then renders following additional elements into the SVG: rdkit:atom idx="4" label="O<sup>-</sup>" x="153.479" y="82.8259" /> But I have not seen anything like this for bonds (latest release of RDKIT and python). Thanks, in advance for any hints. I was wondering about using highlightBondLists and then based on the svg infer the bond annotation, but that seems to be a bit of an overkill. Cheers, Lukas
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