Hi, Please include the error messages you see when you run one of the tests. For example, try doing: ctest -R testData --output-on-failure and send that output along.
On Thu, Jan 24, 2019 at 10:30 PM Xuan Cao <danis....@hotmail.com> wrote: > Hi, > > Thank you for the suggestion, but I have already setup the path with > following line before cmake .. > > export RDBASE=/opt/RDKit_20XX_XX_X > export LD_LIBRARY_PATH=$RDBASE/lib:$LD_LIBRARY_PATH > export PYTHONPATH=$RDBASE:$PYTHONPATH > > Xuan > ------------------------------ > *From:* Paolo Tosco <paolo.tosco.m...@gmail.com> > *Sent:* January 24, 2019 14:04 > *To:* rdkit-discuss@lists.sourceforge.net > *Subject:* Re: [Rdkit-discuss] ctest failed while trying to build the > rdkit from source > > > Hi Xuan, > > > try to > > > export RDBASE=/absolute/path/to/rdkit > > export PYTHONPATH=$RDBASE > > export LD_LIBRARY_PATH=$RDBASE/lib:$LD_LIBRARY_PATH > > > then re-run ctest. > > > Cheers, > > p. > > On 01/24/19 20:48, Xuan Cao wrote: > > Sorry, forgot to attach the file > > ------------------------------ > *From:* Xuan Cao <danis....@hotmail.com> <danis....@hotmail.com> > *Sent:* January 24, 2019 13:44 > *To:* rdkit-discuss@lists.sourceforge.net > *Subject:* [Rdkit-discuss] ctest failed while trying to build the rdkit > from source > > Hi, > > I am trying to build the rdkit from source on a fresh new ubuntu18.04 > virutal machine with virtual box (I did sudo apt update; sudo apt upgrade; > etc.). > > I successfully executed "sudo cmake ..", "sudo make", "sudo make install" > commands, but the sudo ctest gave me only 29% tests passed (I attached file > with failed test). > > Then I tried the c++ example from rdkit/Docs/Book/. When I compile the > code with "#include <GraphMol/GraphMol.h>", the system couldn't find the > the header file: GraphMol/GraphMol.h. > > I also tried to directly import rdkit by executing "from rdkit import > Chem" from python script, but it complain about no module named "rdkit". > > I know that conda install works (I can import rdkit with conda), but I > want to use rdkit functionalities without any virtual environment, so I > choose to build from source. > > Is there any suggestion that can help to use rdkit from source without any > virtualenv (python or cpp)? > > Any help appreciated! > > Thanks! > Xuan > > > > > > > > _______________________________________________ > Rdkit-discuss mailing > listRdkit-discuss@lists.sourceforge.nethttps://lists.sourceforge.net/lists/listinfo/rdkit-discuss > > > _______________________________________________ > Rdkit-discuss mailing list > Rdkit-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss >
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