Hi Paolo, Thank you, that does it.
--Andy On Wed, Mar 27, 2019 at 12:53 PM Paolo Tosco <paolo.tosco.m...@gmail.com> wrote: > Hi Andy, > > for that to work with Python 3 you will need to replace sys.stdin with > sys.stdin.buffer. > > HTH, cheers > Paolo > > On 03/27/19 18:32, Andy wrote: > > Hi, > > I have used the git version of rdkit for years (local build with python > 2.7). The last update pushed me to use python3, and, in addition to the > usual fixes, I noticed that ForwardSDMolSupplier does not work with > sys.stdin anymore, i.e., the usual construct > > fin = Chem.ForwardSDMolSupplier(sys.stdin) > for mol in fin: > > gives > [11:59:54] Unexpected error hit on line 1 > [11:59:54] ERROR: moving to the begining of the next molecule > TypeError: expected bytes, str found > > The above exception was the direct cause of the following exception: > > Traceback (most recent call last): > File "test.py", line 7, in <module> > for mol in fin: > SystemError: <Boost.Python.function object at 0x5605d65e0ac0> returned a > result with an error set > > The pre-built conda package > (linux-64/rdkit-2018.09.2.0-py37hc20afe1_1.tar.bz2) shows the same > behavior. I am using 64-bit Linux (Arch) system. > > Thanks, > --Andy > > > > > > > _______________________________________________ > Rdkit-discuss mailing > listRdkit-discuss@lists.sourceforge.nethttps://lists.sourceforge.net/lists/listinfo/rdkit-discuss > > >
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