Hi Esther,
below I detail all steps to download and successfully build RDKit
Release 2019.03.1 with C# wrappers on Windows in a conda environment
starting from a fresh Miniconda install done in C:\a3. The build relies
on conda Boost.
C:\Users\paolo>C:\a3\condabin\activate.bat
conda.bat activate
(base) C:\Users\paolo>conda create --name my-rdkit-env
Collecting package metadata: done
Solving environment: done
## Package Plan ##
environment location: C:\a3\envs\my-rdkit-env
Proceed ([y]/n)? y
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
# $ conda activate my-rdkit-env
#
# To deactivate an active environment, use
#
# $ conda deactivate
(base) C:\Users\paolo>conda activate my-rdkit-env
(my-rdkit-env) C:\Users\paolo>conda install curl
Collecting package metadata: done
Solving environment: done
## Package Plan ##
environment location: C:\a3\envs\my-rdkit-env
added / updated specs:
- curl
The following packages will be downloaded:
package | build
---------------------------|-----------------
ca-certificates-2019.3.9 | hecc5488_0 184 KB conda-forge
curl-7.64.1 | h4496350_0 110 KB conda-forge
krb5-1.16.3 | hdd46e55_1001 819 KB conda-forge
libcurl-7.64.1 | h4496350_0 271 KB conda-forge
libssh2-1.8.2 | h642c060_2 186 KB conda-forge
openssl-1.1.1b | hfa6e2cd_2 4.8 MB conda-forge
tk-8.6.9 | hfa6e2cd_1001 3.7 MB conda-forge
vc-14 | 0 985 B conda-forge
vs2015_runtime-14.0.25420 | 0 1.9 MB conda-forge
zlib-1.2.11 | h2fa13f4_1004 236 KB conda-forge
------------------------------------------------------------
Total: 12.2 MB
The following NEW packages will be INSTALLED:
ca-certificates conda-forge/win-64::ca-certificates-2019.3.9-hecc5488_0
curl conda-forge/win-64::curl-7.64.1-h4496350_0
krb5 conda-forge/win-64::krb5-1.16.3-hdd46e55_1001
libcurl conda-forge/win-64::libcurl-7.64.1-h4496350_0
libssh2 conda-forge/win-64::libssh2-1.8.2-h642c060_2
openssl conda-forge/win-64::openssl-1.1.1b-hfa6e2cd_2
tk conda-forge/win-64::tk-8.6.9-hfa6e2cd_1001
vc conda-forge/win-64::vc-14-0
vs2015_runtime conda-forge/win-64::vs2015_runtime-14.0.25420-0
zlib conda-forge/win-64::zlib-1.2.11-h2fa13f4_1004
Proceed ([y]/n)? y
Downloading and Extracting Packages
libssh2-1.8.2 | 186 KB |
######################################################################################################################################################################################################################################
| 100%
ca-certificates-2019 | 184 KB |
######################################################################################################################################################################################################################################
| 100%
krb5-1.16.3 | 819 KB |
######################################################################################################################################################################################################################################
| 100%
libcurl-7.64.1 | 271 KB |
######################################################################################################################################################################################################################################
| 100%
vs2015_runtime-14.0. | 1.9 MB |
######################################################################################################################################################################################################################################
| 100%
vc-14 | 985 B |
######################################################################################################################################################################################################################################
| 100%
curl-7.64.1 | 110 KB |
######################################################################################################################################################################################################################################
| 100%
zlib-1.2.11 | 236 KB |
######################################################################################################################################################################################################################################
| 100%
openssl-1.1.1b | 4.8 MB |
######################################################################################################################################################################################################################################
| 100%
tk-8.6.9 | 3.7 MB |
######################################################################################################################################################################################################################################
| 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
(my-rdkit-env) C:\Users\paolo>cd AppData\Local
(my-rdkit-env) C:\Users\paolo\AppData\Local>curl -L -O
https://github.com/rdkit/rdkit/archive/Release_2019_03_1.tar.gz
% Total % Received % Xferd Average Speed Time Time Time
Current
Dload Upload Total Spent Left Speed
100 130 0 130 0 0 198 0 --:--:-- --:--:--
--:--:-- 198
100 54.9M 0 54.9M 0 0 4265k 0 --:--:-- 0:00:13 --:--:--
4616k
(my-rdkit-env) C:\Users\paolo\AppData\Local>conda install cmake boost
eigenswig
Collecting package metadata: done
Solving environment: done
## Package Plan ##
environment location: C:\a3\envs\my-rdkit-env
added / updated specs:
- boost
- cmake
- eigen
The following packages will be downloaded:
package | build
---------------------------|-----------------
boost-1.69.0 |py37hf75dd32_1001 764 KB conda-forge
boost-cpp-1.69.0 | h6a4c333_1000 31.9 MB
conda-forge
certifi-2019.3.9 | py37_0 149 KB
conda-forge
cmake-3.14.3 | he025d50_0 9.0 MB conda-forge
eigen-3.3.7 | he980bc4_1000 963 KB conda-forge
intel-openmp-2019.3 | 203 1.7 MB
libblas-3.8.0 | 8_mkl 3.5 MB conda-forge
libcblas-3.8.0 | 8_mkl 3.5 MB conda-forge
liblapack-3.8.0 | 8_mkl 3.5 MB conda-forge
mkl-2019.3 | 203 157.4 MB
numpy-1.16.3 | py37h873a0b8_0 4.0 MB conda-forge
pip-19.1 | py37_0 1.8 MB conda-forge
python-3.7.3 | hb12ca83_0 17.8 MB conda-forge
setuptools-41.0.1 | py37_0 658 KB conda-forge
sqlite-3.26.0 | hfa6e2cd_1001 958 KB conda-forge
swig-3.0.12 | 2 1.3 MB conda-forge
wheel-0.33.1 | py37_0 52 KB
conda-forge
wincertstore-0.2 | py37_1002 13 KB conda-forge
------------------------------------------------------------
Total: 237.6 MB
The following NEW packages will be INSTALLED:
boost conda-forge/win-64::boost-1.69.0-py37hf75dd32_1001
boost-cpp conda-forge/win-64::boost-cpp-1.69.0-h6a4c333_1000
certifi conda-forge/win-64::certifi-2019.3.9-py37_0
cmake conda-forge/win-64::cmake-3.14.3-he025d50_0
eigen conda-forge/win-64::eigen-3.3.7-he980bc4_1000
intel-openmp pkgs/main/win-64::intel-openmp-2019.3-203
libblas conda-forge/win-64::libblas-3.8.0-8_mkl
libcblas conda-forge/win-64::libcblas-3.8.0-8_mkl
liblapack conda-forge/win-64::liblapack-3.8.0-8_mkl
mkl pkgs/main/win-64::mkl-2019.3-203
numpy conda-forge/win-64::numpy-1.16.3-py37h873a0b8_0
pip conda-forge/win-64::pip-19.1-py37_0
python conda-forge/win-64::python-3.7.3-hb12ca83_0
setuptools conda-forge/win-64::setuptools-41.0.1-py37_0
sqlite conda-forge/win-64::sqlite-3.26.0-hfa6e2cd_1001
swig conda-forge/win-64::swig-3.0.12-2
wheel conda-forge/win-64::wheel-0.33.1-py37_0
wincertstore conda-forge/win-64::wincertstore-0.2-py37_1002
Proceed ([y]/n)? y
Downloading and Extracting Packages
numpy-1.16.3 | 4.0 MB |
######################################################################################################################################################################################################################################
| 100%
wincertstore-0.2 | 13 KB |
######################################################################################################################################################################################################################################
| 100%
liblapack-3.8.0 | 3.5 MB |
######################################################################################################################################################################################################################################
| 100%
boost-cpp-1.69.0 | 31.9 MB |
######################################################################################################################################################################################################################################
| 100%
python-3.7.3 | 17.8 MB |
######################################################################################################################################################################################################################################
| 100%
certifi-2019.3.9 | 149 KB |
######################################################################################################################################################################################################################################
| 100%
pip-19.1 | 1.8 MB |
######################################################################################################################################################################################################################################
| 100%
eigen-3.3.7 | 963 KB |
######################################################################################################################################################################################################################################
| 100%
intel-openmp-2019.3 | 1.7 MB |
######################################################################################################################################################################################################################################
| 100%
sqlite-3.26.0 | 958 KB |
######################################################################################################################################################################################################################################
| 100%
cmake-3.14.3 | 9.0 MB |
######################################################################################################################################################################################################################################
| 100%
libblas-3.8.0 | 3.5 MB |
######################################################################################################################################################################################################################################
| 100%
libcblas-3.8.0 | 3.5 MB |
######################################################################################################################################################################################################################################
| 100%
boost-1.69.0 | 764 KB |
######################################################################################################################################################################################################################################
| 100%
mkl-2019.3 | 157.4 MB |
######################################################################################################################################################################################################################################
| 100%
swig-3.0.12 | 1.3 MB |
######################################################################################################################################################################################################################################
| 100%
wheel-0.33.1 | 52 KB |
######################################################################################################################################################################################################################################
| 100%
setuptools-41.0.1 | 658 KB |
######################################################################################################################################################################################################################################
| 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
(my-rdkit-env) C:\Users\paolo\AppData\Local>cmake -E tar xzf
Release_2019_03_1.tar.gz
(my-rdkit-env) C:\Users\paolo\AppData\Local>cd rdkit-Release_2019_03_1\
(my-rdkit-env) C:\Users\paolo\AppData\Local\rdkit-Release_2019_03_1>set
RDBASE=%cd%
(my-rdkit-env)
C:\Users\paolo\AppData\Local\rdkit-Release_2019_03_1>cmake
-DBoost_NO_BOOST_CMAKE=ON -S %RDBASE% -B "%RDBASE%\build"
-DRDK_BUILD_SWIG_WRAPPERS=ON -DRDK_BUILD_SWIG_CSHARP_WRAPPER=ON
-DRDK_BUILD_SWIG_JAVA_WRAPPER=OFF -A x64
-- Building for: Visual Studio 15 2017
-- Selecting Windows SDK version 10.0.17763.0 to target Windows 10.0.17134.
-- The C compiler identification is MSVC 19.16.27026.1
-- The CXX compiler identification is MSVC 19.16.27026.1
-- Check for working C compiler: C:/Program Files (x86)/Microsoft Visual
Studio/2017/Professional/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x64/cl.exe
-- Check for working C compiler: C:/Program Files (x86)/Microsoft Visual
Studio/2017/Professional/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x64/cl.exe
-- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: C:/Program Files (x86)/Microsoft
Visual
Studio/2017/Professional/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x64/cl.exe
-- Check for working CXX compiler: C:/Program Files (x86)/Microsoft
Visual
Studio/2017/Professional/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x64/cl.exe
-- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Catch not found in
C:/Users/paolo/AppData/Local/rdkit-Release_2019_03_1/External/catch/catch
Downloading https://github.com/catchorg/Catch2/archive/v2.1.2.tar.gz...
CATCH:
C:/Users/paolo/AppData/Local/rdkit-Release_2019_03_1/External/catch/catch/single_include
-- Found PythonInterp: C:/a3/envs/my-rdkit-env/python.exe (found version
"3.7.3")
-- Found PythonLibs: C:/a3/envs/my-rdkit-env/libs/python37.lib (found
version "3.7.3")
CMake Warning at
C:/a3/envs/my-rdkit-env/Library/share/cmake-3.14/Modules/FindBoost.cmake:1814
(message):
No header defined for python-py37; skipping header check
Call Stack (most recent call first):
CMakeLists.txt:246 (find_package)
-- Found Eigen3: C:/a3/envs/my-rdkit-env/Library/include/eigen3
(Required is at least version "2.91.0")
-- Looking for pthread.h
-- Looking for pthread.h - not found
-- Found Threads: TRUE
-- Boost version: 1.69.0
-- Found the following Boost libraries:
-- serialization
== Using strict rotor definition
-- maeparser include dir set as 'maeparser_INCLUDE_DIRS-NOTFOUND'
-- maeparser libraries set as 'maeparser_LIBRARIES-NOTFOUND'
-- Could NOT find maeparser (missing: maeparser_INCLUDE_DIRS
maeparser_LIBRARIES)
Downloading https://github.com/schrodinger/maeparser/archive/v1.1.tar.gz...
-- Boost version: 1.69.0
-- Found the following Boost libraries:
-- system
-- iostreams
-- regex
-- coordgen include dir set as coordgen_INCLUDE_DIRS-NOTFOUND
-- coordgen libraries set as 'coordgen_LIBRARIES-NOTFOUND'
-- coordgen templates file set as 'coordgen_TEMPLATE_FILE-NOTFOUND'
-- Could NOT find coordgen (missing: coordgen_INCLUDE_DIRS
coordgen_LIBRARIES coordgen_TEMPLATE_FILE)
Downloading
https://github.com/schrodinger/coordgenlibs/archive/v1.2.2.tar.gz...
-- Found ZLIB: C:/a3/envs/my-rdkit-env/Library/lib/z.lib (found version
"1.2.11")
-- Boost version: 1.69.0
-- Found the following Boost libraries:
-- system
-- iostreams
-- regex
-- Could NOT find Boost
-- Boost version: 1.69.0
-- Found the following Boost libraries:
-- system
-- iostreams
-- regex
-- Could NOT find Boost
== Updating Filters.cpp from pains file
== Done updating pains files
Downloading https://github.com/Tencent/rapidjson/archive/v1.1.0.tar.gz...
-- Found SWIG: C:/a3/envs/my-rdkit-env/Library/bin/swig.exe (found
version "3.0.12")
-- Boost version: 1.69.0
-- Found the following Boost libraries:
-- system
-- iostreams
-- regex
-- Could NOT find Boost
SUFFIX:
JAVA_LIBS:
RGroupDecomposition;SubstructLibrary;MolStandardize;FilterCatalog;Catalogs;FMCS;MolDraw2D;FileParsers;SmilesParse;Depictor;SubstructMatch;ChemReactions;Fingerprints;ChemTransforms;Subgraphs;GraphMol;DataStructs;Trajectory;Descriptors;PartialCharges;MolTransforms;DistGeomHelpers;DistGeometry;ForceFieldHelpers;ForceField;EigenSolvers;Optimizer;MolAlign;Alignment;SimDivPickers;RDGeometryLib;RDStreams;RDGeneral;C:/a3/envs/my-rdkit-env/Library/lib/boost_serialization.lib;C:/a3/envs/my-rdkit-env/Library/lib/boost_iostreams.lib;C:/a3/envs/my-rdkit-env/Library/lib/boost_system.lib
CMake Warning (dev) at
C:/a3/envs/my-rdkit-env/Library/share/cmake-3.14/Modules/UseSWIG.cmake:600
(message):
Policy CMP0078 is not set: UseSWIG generates standard target names. Run
"cmake --help-policy CMP0078" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
Call Stack (most recent call first):
Code/JavaWrappers/csharp_wrapper/CMakeLists.txt:63 (SWIG_ADD_LIBRARY)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at
C:/a3/envs/my-rdkit-env/Library/share/cmake-3.14/Modules/UseSWIG.cmake:460
(message):
Policy CMP0086 is not set: UseSWIG honors SWIG_MODULE_NAME via -module
flag. Run "cmake --help-policy CMP0086" for policy details. Use the
cmake_policy command to set the policy and suppress this warning.
Call Stack (most recent call first):
C:/a3/envs/my-rdkit-env/Library/share/cmake-3.14/Modules/UseSWIG.cmake:695
(SWIG_ADD_SOURCE_TO_MODULE)
Code/JavaWrappers/csharp_wrapper/CMakeLists.txt:63 (SWIG_ADD_LIBRARY)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Configuring done
-- Generating done
-- Build files have been written to:
C:/Users/paolo/AppData/Local/rdkit-Release_2019_03_1/build
(my-rdkit-env) C:\Users\paolo\AppData\Local\rdkit-Release_2019_03_1>cd build
(my-rdkit-env)
C:\Users\paolo\AppData\Local\rdkit-Release_2019_03_1\build>"C:\Program
Files (x86)\Microsoft Visual
Studio\2017\Professional\MSBuild\15.0\Bin\MSBuild.exe" /m:4
/p:Configuration=Release /p:Platform=x64 INSTALL.vcxproj
[...]
227 Warning(s)
0 Error(s)
Time Elapsed 00:27:44.47
(my-rdkit-env) C:\Users\paolo\AppData\Local\rdkit-Release_2019_03_1\build>
Cheers,
p.
On 05/03/19 10:58, Esther Barlow-Smith wrote:
Hi Paolo,
I have tried it with the conda provided boost and it didn't work which
is why I thought I'd try with a non-Anaconda Boost, but I've now
switched back to the conda boost version. Unfortunately it still does
not work.
Esther
------------------------------------------------------------------------
*From:* Paolo Tosco <paolo.tosco.m...@gmail.com>
*Sent:* 03 May 2019 10:43
*To:* Esther Barlow-Smith
*Subject:* Re: [Rdkit-discuss] Unable to build RDKit C# wrapper due to
boost libraries
Hi Esther,
I have looked at your error messages in more detail.
So it looks like you are using cmake from an Anaconda CMD shell:
conda activate my-rdkit-env
but are then trying to use a non-Anaconda Boost build located in
C:\Users\e.barlow-smith\AppData\Local\boost_1_67_0.
Is there any specific reason why you are doing so? This is going to
fail unless you built Boost against the conda Python.
If you use the conda-provided Boost doing a
conda install boost
you can skip defining BOOST_ROOT, BOOST_LIBRARYDIR and
BOOST_INCLUDEDIR, and cmake should automatically find and use the
conda Boost.
Let me know if this works.
p.
On 05/03/19 10:28, Esther Barlow-Smith wrote:
Hi Paolo,
I updated CMake to the 3.14.3 version with conda but it gave me the
same error. I have also tried previously with boost 1.56 and it
didn't work but I could try using it again.
Esther
------------------------------------------------------------------------
*From:* Paolo Tosco <paolo.tosco.m...@gmail.com>
<mailto:paolo.tosco.m...@gmail.com>
*Sent:* 03 May 2019 10:08
*To:* Esther Barlow-Smith
*Subject:* Re: [Rdkit-discuss] Unable to build RDKit C# wrapper due
to boost libraries
Hi Esther,
worth updating CMake to the latest version, as the Boost version you
are using is fairly new and a less recent CMake could not be able to
find it.
Let me know how it goes.
p.
On 05/03/19 10:06, Esther Barlow-Smith wrote:
Hi Paolo,
I tried again with your correction but I got the same error that the
boost libraries could not be found.
Thanks,
Esther
------------------------------------------------------------------------
*From:* Paolo Tosco <paolo.tosco.m...@gmail.com>
<mailto:paolo.tosco.m...@gmail.com>
*Sent:* 03 May 2019 09:43
*To:* Esther Barlow-Smith; rdkit-discuss@lists.sourceforge.net
<mailto:rdkit-discuss@lists.sourceforge.net>
*Subject:* Re: [Rdkit-discuss] Unable to build RDKit C# wrapper due
to boost libraries
Dear Esther,
you should not set BOOST_INCLUDEDIR, BOOST_ROOT, BOOST_LIBRARYDIR as
environment variables, but as CMake parameters, i.e. something like:
cmake -S %RDBASE% -B "%RDBASE%\build"
-DRDK_BUILD_SWIG_CSHARP_WRAPPER=ON
-DBOOST_ROOT=C:\Users\e.barlow-smith\AppData\Local\boost_1_67_0\boost
-DBOOST_INCLUDEDIR=C:\Users\e.barlow-smith\AppData\Local\boost_1_67_0\boost\include
-DBOOST_LIBRARYDIR=C:\Users\e.barlow-smith\AppData\Local\boost_1_67_0\boost\lib
Cheers,
p.
On 05/02/19 20:28, Esther Barlow-Smith wrote:
Dear all,
I am trying to build the RDKit C# wrapper but I am having issues
due to the build not finding certain boost libraries (boost_system,
boost_iostreams and boost_python). I have tried solving the error
by installing boost in different locations; through anaconda and
also by installing boost separately but I get the error for both
instances. I have also set the 3 environment
variables; BOOST_INCLUDEDIR, BOOST_ROOT, BOOST_LIBRARYDIR, but
CMake ignores the variables no matter what they are set to.
The error is reproducible for me with the following code:
set RDBASE=C:\Users\e.barlow-smith\AppData\Local\RDKit
set BOOST_ROOT=C:\Users\e.barlow-smith\AppData\Local\boost_1_67_0\boost
cd %RDBASE%
conda activate my-rdkit-env
cmake -S %RDBASE% -B "%RDBASE%\build"
-DRDK_BUILD_SWIG_CSHARP_WRAPPER=ON
My configuration:
OS: Windows: 10.0.17
Rdkit: 2019.03.01
Python: 3.7.3
CMake: 3.14
Conda: 4.6.11
swig: 3.0.12
*Error message:*
-- Found Catch2 source in
C:/Users/e.barlow-smith/AppData/Local/RDKit/External/catch/catch
CATCH:
C:/Users/e.barlow-smith/AppData/Local/RDKit/External/catch/catch/single_include
CMake Warning (dev) at CMakeLists.txt:246 (find_package):
Policy CMP0074 is not set: find_package uses <PackageName>_ROOT
variables.
Run "cmake --help-policy CMP0074" for policy details. Use the
cmake_policy
command to set the policy and suppress this warning.
Environment variable Boost_ROOT is set to:
C:\Users\e.barlow-smith\AppData\Local\boost_1_67_0\boost
For compatibility, CMake is ignoring the variable.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning at
C:/Users/e.barlow-smith/AppData/Local/Continuum/anaconda3/envs/my-rdkit-env/Library/share/cmake-3.14/Modules/FindBoost.cmake:1799
(message):
No header defined for python-py37; skipping header check
Call Stack (most recent call first):
CMakeLists.txt:246 (find_package)
CMake Error at
C:/Users/e.barlow-smith/AppData/Local/Continuum/anaconda3/envs/my-rdkit-env/Library/share/cmake-3.14/Modules/FindBoost.cmake:2132
(message):
Unable to find the requested Boost libraries.
Boost version: 1.67.0
Boost include path:
C:/Users/e.barlow-smith/AppData/Local/Continuum/anaconda3/envs/my-rdkit-env/Library/include
Could not find the following Boost libraries:
boost_python
No Boost libraries were found. You may need to set
BOOST_LIBRARYDIR to the
directory containing Boost libraries or BOOST_ROOT to the location of
Boost.
Call Stack (most recent call first):
CMakeLists.txt:254 (find_package)
-- Could NOT find Boost
== Using strict rotor definition
-- maeparser include dir set as
'C:/Users/e.barlow-smith/AppData/Local/RDKit/External/CoordGen'
-- maeparser libraries set as
'C:/Users/e.barlow-smith/AppData/Local/Continuum/anaconda3/envs/my-rdkit-env/Library/lib/maeparser.lib'
-- Found maeparser:
C:/Users/e.barlow-smith/AppData/Local/RDKit/External/CoordGen
-- coordgen include dir set as
C:/Users/e.barlow-smith/AppData/Local/RDKit/External/CoordGen
-- coordgen libraries set as
'C:/Users/e.barlow-smith/AppData/Local/Continuum/anaconda3/envs/my-rdkit-env/Library/lib/coordgen.lib'
-- coordgen templates file set as 'coordgen_TEMPLATE_FILE-NOTFOUND'
-- Could NOT find coordgen (missing: coordgen_TEMPLATE_FILE)
-- Found coordgenlibs source in
C:/Users/e.barlow-smith/AppData/Local/RDKit/External/CoordGen/coordgen
Could not find the following Boost libraries:
boost_system
boost_iostreams
Some (but not all) of the required Boost libraries were found.
You may
need to install these additional Boost libraries. Alternatively, set
BOOST_LIBRARYDIR to the directory containing Boost libraries or
BOOST_ROOT
to the location of Boost.
Call Stack (most recent call first):
Code/RDStreams/CMakeLists.txt:1 (find_package)
-- Could NOT find Boost
CMake Warning (dev) at Code/GraphMol/FileParsers/CMakeLists.txt:6
(find_package):
CMake Error at
C:/Users/e.barlow-smith/AppData/Local/Continuum/anaconda3/envs/my-rdkit-env/Library/share/cmake-3.14/Modules/FindBoost.cmake:2132
(message):
Unable to find the requested Boost libraries.
-- Could NOT find Boost
== Making EnumerateLibrary without boost Serialization support
== Making FilterCatalog without boost Serialization support
== Updating Filters.cpp from pains file
== Done updating pains files
== Making SubstructLibrary without boost Serialization support
-- Found RapidJSON source in
C:/Users/e.barlow-smith/AppData/Local/RDKit/External
-- Configuring incomplete, errors occurred!
See also
"C:/Users/e.barlow-smith/AppData/Local/RDKit/build/CMakeFiles/CMakeOutput.log".
See also
"C:/Users/e.barlow-smith/AppData/Local/RDKit/build/CMakeFiles/CMakeError.log".
Thanks in advance,
Esther
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