Hi Zoltan, I use the system compiler (clang++) on the Mac, so I don't have direct experience here.
One problem is likely that the cmake argument you want is -DBoost_NO_SYSTEM_PATHS=ON those variable names are case sensitive. The other point is that cmake didn't officiallly support boost 1.72 until cmake v3.16.2 I'm not sure that there's a version out of cmake that directly supports boost 1.72. If you're using an older (but still reasonably up-to-date) version of cmake you might also try: -DBoost_NO_BOOST_CMAKE=TRUE -greg On Sat, Jan 18, 2020 at 2:10 PM Zoltan Takacs <zozo...@gmail.com> wrote: > Dear RDKiters, > > I would like to compile RDKit from source on a macOS 10.15 computer with > gnu c/c++ compilers and a newer version of boost (1.72.0) instead of > 1.56.0. > > I run cmake with the following setting: > > cmake -D > PYTHON_LIBRARY=/usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/lib/ > -D > PYTHON_INCLUDE_DIR=/usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/ > -D > PYTHON_EXECUTABLE=/usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/bin/python3 > -D BOOST_ROOT=/usr/local/Cellar/boost/1.72.0/ > -D BOOST_NO_SYSTEM_PATHS=ON > -D CMAKE_C_COMPILER=/usr/local/bin/gcc > -D CMAKE_CXX_COMPILER=/usr/local/bin/g++ .. > > This ends up throwing me loads of errors but it starts like this: > > CATCH: > /Users/all/data/rdkit-Release_2019_09_3/External/catch/catch/single_include > -- Found PythonInterp: > /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/bin/python3 > (found version "3.7.5") > -- Found PythonLibs: > /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/lib > (found version "3.7.5") > -- Boost 1.56.0 found. > -- Found Boost components: > python3 > PYTHON Py_ENABLE_SHARED: 0 > PYTHON USING LINK LINE: -bundle -undefined dynamic_lookup -isysroot > /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk > -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version > "2.91.0") > -- Looking for pthread.h > -- Looking for pthread.h - found > -- Looking for pthread_create > -- Looking for pthread_create - found > -- Found Threads: TRUE > CMake Warning at > /usr/local/lib/cmake/boost_serialization-1.72.0/libboost_serialization-variant-shared.cmake:64 > (message): > Target Boost::serialization already has an imported location > '/usr/local/lib/libboost_serialization-mt.dylib', which will be > overwritten > with '/usr/local/lib/libboost_serialization.dylib' > Call Stack (most recent call first): > > /usr/local/lib/cmake/boost_serialization-1.72.0/boost_serialization-config.cmake:57 > (include) > /usr/local/lib/cmake/Boost-1.72.0/BoostConfig.cmake:120 (find_package) > /usr/local/lib/cmake/Boost-1.72.0/BoostConfig.cmake:185 > (boost_find_component) > /usr/local/Cellar/cmake/3.13.2/share/cmake/Modules/FindBoost.cmake:264 > (find_package) > CMakeLists.txt:361 (find_package) > > > It does not seem to use the specified boost libs of version 1.72.0 but it > uses the 1.56.0. After this there are more error messages thrown which > are of the type: > > CMake Error at Code/cmake/Modules/RDKitUtils.cmake:55 (add_library): > Target "MolStandardize_static" links to target "Boost::iostreams" but the > target was not found. Perhaps a find_package() call is missing for an > IMPORTED target, or an ALIAS target is missing? > Call Stack (most recent call first): > Code/GraphMol/MolStandardize/CMakeLists.txt:4 (rdkit_library) > > and then it says that the following cmake option was not used: > > -- Generating done > CMake Warning: > Manually-specified variables were not used by the project: > > BOOST_NO_SYSTEM_PATHS > > What are the correct settings for cmake to be able to use a newer version > of BOOST and PYTHON3? > > Thanks, > Zoltan > > > > > > > > _______________________________________________ > Rdkit-discuss mailing list > Rdkit-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss >
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