Hi Tim,

I’ll take a look later and get back to you.

Cheers,
p.

> On 17 Apr 2020, at 18:55, Tim Dudgeon <tdudgeon...@gmail.com> wrote:
> 
> I'm wanting to use AllChem.ConstrainedEmbed() to generate a conformer of a 
> molecule tethered to a molecule that should always have some MCS. I found 
> some code on the internet that mostly works, but I don't fully understand.
> 
> It generally works as planned, but for a small number of examples it fails.
> 
> Can someone guide me to what is wrong. Here is an example (good and bad):
> 
> https://github.com/tdudgeon/jupyter_mpro/blob/master/tethering.ipynb
> 
> 
> 
> 
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