Hi Jean-Marc, Hmm, which version of py3dmol do you have installed? I have v0.8.0:
$ conda list | grep 3dmol py3dmol 0.8.0 py_0 conda-forge -greg On Tue, Feb 23, 2021 at 5:22 PM Jean-Marc Nuzillard < jm.nuzill...@univ-reims.fr> wrote: > Dear all, > > I tried to reproduce the workflow in the recent blog post by Greg > > https://greglandrum.github.io/rdkit-blog/conformers/exploration/2021/02/22/etkdg-and-distance-constraints.html > > and everything was running fine up to > > IPythonConsole.drawMol3D(m,confId=cids[1]) > > that returned: > > AttributeError Traceback (most recent call last) > <ipython-input-4-abde4476d009> in <module> > ----> 1 IPythonConsole.drawMol3D(m,confId=cids[1]) > > ~\Anaconda3\envs\rdkit3\lib\site-packages\rdkit\Chem\Draw\IPythonConsole.py > > in drawMol3D(m, view, confId, drawAs, bgColor, size) > 71 size = molSize_3d > 72 if view is None: > ---> 73 view = py3Dmol.view(width=size[0], height=size[1]) > 74 view.removeAllModels() > 75 try: > > AttributeError: module 'py3Dmol' has no attribute 'view' > > I am using a freshly installed rdkit 2020.09.4 from conda under windows. > Is there something I can do to see the 3D structure? > > Best, > > Jean-Marc Nuzillard > > > > _______________________________________________ > Rdkit-discuss mailing list > Rdkit-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss >
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