Thank you, I was looking for more readable images: for example in OpenBabel "the default is to draw all hetero atoms and terminal C explicitly, together with their attched hydrogens." Basically I'm approaching rdkit right now, so I was wondering if there was something wrong in my approach. "Not available" is quite an answer, but this leads me to new questions:
1) What is the "official" way to pass drawing options? 2) Where can I find an updated doc about the available drawing options? ( https://www.rdkit.org/docs/source/rdkit.Chem.Draw.MolDrawing.html this apparently is outdated, since the "noCarbonSymbol" is still there) It's just that when the doc it's outdated it can be frustrating: I spent hours trying to understand what I was doing wrong. For example: let's say I want all atoms and bonds black. I found a snippet in your cookbook that requires importing ipython for that: is it really necessary? Thank you Il giorno gio 4 mar 2021 alle ore 06:52 Greg Landrum <greg.land...@gmail.com> ha scritto: > Hi Thomas, > > noCarbonSymbols was an option for the old drawing code and is not > currently available in the new drawing code since it didn't seem to be > particularly useful. > > We can maybe provide suggestions if you provide an example image that > you're getting and explain what you'd like to change about it. > > Best, > -greg > > > On Tue, Mar 2, 2021 at 8:49 PM Thomas <odioidenti...@gmail.com> wrote: > >> Hi everybody, >> I'm very new to rdkit, can anybody explain to me how to set drawing >> options? >> I wanted to do something easy like: >> >> MolToImage(mol, noCarbonSymbol=False) >> >> but apparently it is not the right way. Following some recipes i tried >> also with: >> >> drawer = rdMolDraw2D.MolDraw2DCairo(100, 100) >> drawer.drawOptions().noCarbonSymbols = False >> >> but again no luck. I tried also to modify the MolDrawOptions object >> >> options = drawer.drawOptions() >> >> but there is nothing about "noCarbonSymbol"... >> >> Can anybody address me on the right path? Much appreciated >> Thomas >> _______________________________________________ >> Rdkit-discuss mailing list >> Rdkit-discuss@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/rdkit-discuss >> >
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