Hi RDKit Community,
I'm trying to run a script in the command line without having any RDKit warnings or errors show up in the CL. Instead, I want them written into a log.txt from rdkit import Chem from contextlib import redirect_stderr Chem.WrapLogs() with open('log.txt', 'w') as f: with redirect_stderr(f): mol = Chem.MolFromSmiles("c1ccccc") The error does indeed get written to the log.txt file (I'm assuming warnings would be too). What is strange is that the stderr still shows up in the command line, even though I'd already redirected it to the log.txt. Does this mean that there are two stderr streams? How is this possible? I've been reading several old posts on this topic, but none really fits my problem: https://sourceforge.net/p/rdkit/mailman/rdkit-discuss/thread/CAOC-GK0oTH36vvL7eVyWMJg4zmERpqctonrgNnxG10QmgYXhdg%40mail.gmail.com/#msg36030331 https://sourceforge.net/p/rdkit/mailman/message/33261506/ <- addressed by WrapLogs() I believe <https://sourceforge.net/p/rdkit/mailman/rdkit-discuss/thread/CAOC-GK0oTH36vvL7eVyWMJg4zmERpqctonrgNnxG10QmgYXhdg%40mail.gmail.com/#msg36030331>http://rdkit.blogspot.com/2016/03/capturing-error-information.html https://github.com/rdkit/rdkit/pull/739 Would appreciate any ideas. Thanks, Adelene <https://github.com/rdkit/rdkit/pull/739> Doctoral Researcher Environmental Cheminformatics UNIVERSITÉ DU LUXEMBOURG Campus Belval | Luxembourg Centre for Systems Biomedicine 6, avenue du Swing, L-4367 Belvaux T +356 46 66 44 67 18 https://adelenel.ai
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